Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0637.Seq
         (359 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    30   0.010
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    30   0.010
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   5.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.7  

>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 29.9 bits (64), Expect = 0.010
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 186 CWNCIHKCCYHRMYWIPRCLS-LNQCYWNCRWMIHFHHDCWNCIHKCYYRRMY*ILR 19
           C NCIH   +  ++W+  C S +N C +   +   F     + I KC+ +R    LR
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 90


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 29.9 bits (64), Expect = 0.010
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -3

Query: 186 CWNCIHKCCYHRMYWIPRCLS-LNQCYWNCRWMIHFHHDCWNCIHKCYYRRMY*ILR 19
           C NCIH   +  ++W+  C S +N C +   +   F     + I KC+ +R    LR
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIY-ALFSKDFRFAFKSIICKCFCKRRTNTLR 538


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = -3

Query: 216 CRWMIHFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWN 103
           CR+  H    C  C    C   M     C   N   WN
Sbjct: 737 CRYEAHCFALCHCCDFDACDCEMTCPAGCKCYNDRTWN 774


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +1

Query: 193  MEVYHPPAVPVXLIQTQTXRDQYIRW 270
            + V  PP+ PV  + + T     + W
Sbjct: 1399 LTVQVPPSAPVLYVTSSTSSSILLHW 1424


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 7.7
 Identities = 7/26 (26%), Positives = 12/26 (46%)
 Frame = +1

Query: 193  MEVYHPPAVPVXLIQTQTXRDQYIRW 270
            + V  PP+ PV  + + T     + W
Sbjct: 1395 LTVQVPPSAPVLYVTSSTSSSILLHW 1420


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,680
Number of Sequences: 438
Number of extensions: 1222
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)