Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0637.Seq
(359 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote... 30 0.40
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 29 0.70
At5g14920.1 68418.m01750 gibberellin-regulated family protein si... 29 0.93
At2g29850.1 68415.m03625 hypothetical protein 29 0.93
At4g17130.1 68417.m02579 hypothetical protein 28 2.1
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 2.8
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 27 2.8
At4g34930.1 68417.m04952 1-phosphatidylinositol phosphodiesteras... 27 3.8
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel... 27 3.8
At3g50790.1 68416.m05562 late embryogenesis abundant protein, pu... 27 5.0
At1g69280.1 68414.m07943 expressed protein 27 5.0
At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein c... 26 6.6
At2g27380.1 68415.m03302 proline-rich family protein contains pr... 26 6.6
At1g54970.1 68414.m06278 proline-rich family protein similar to ... 26 6.6
At3g62680.1 68416.m07041 proline-rich family protein contains pr... 26 8.7
>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
low similarity to SP|Q02104 Lipase 1 precursor (EC
3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
acetyltransferase component of acetoin cleaving system
(EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
eutrophus}; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 417
Score = 30.3 bits (65), Expect = 0.40
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -3
Query: 177 CIHKCCYHRMY-WIPR-CLSLNQCYWNCRWMI-HFHHDCWNCIH 55
C C +H+++ W+ + C+ + +W + + H HH W+ +H
Sbjct: 292 CFIICKHHKIWEWLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 29.5 bits (63), Expect = 0.70
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -3
Query: 201 HFHHDCWNCIHKCCYHRMYW 142
HFHH +C H CY YW
Sbjct: 322 HFHHSSCSCYH--CYDNKYW 339
>At5g14920.1 68418.m01750 gibberellin-regulated family protein
similar to SP|P46689 Gibberellin-regulated protein 1
precursor {Arabidopsis thaliana}; contains Pfam profile
PF02704: Gibberellin regulated protein
Length = 275
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +1
Query: 88 YHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTV-VMEVYHPPAVP 222
Y PP +P T I+ T + PV P + P V + PP P
Sbjct: 59 YKPPTLPTTPIKPPTTKPPVKPPTIPVTPVKPPVSTPPIKLPPVQP 104
Score = 29.1 bits (62), Expect = 0.93
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = +1
Query: 61 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVP 183
T P V Y+PP PV + P P V +D VP
Sbjct: 178 TTPPVQPPTYNPPTTPVKPPTAPPVKPPTPPPVRTRIDCVP 218
Score = 28.3 bits (60), Expect = 1.6
Identities = 19/53 (35%), Positives = 21/53 (39%)
Frame = +1
Query: 67 PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPV 225
P V Y PP PV + T PV P T P V Y+PP PV
Sbjct: 150 PPVQPPTYKPPTSPV---KPPTTTPPVKPPT-----TTPPVQPPTYNPPTTPV 194
>At2g29850.1 68415.m03625 hypothetical protein
Length = 284
Score = 29.1 bits (62), Expect = 0.93
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 61 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVY 204
T P V + A P IQ T+ D +P+ AAL ++ E+Y
Sbjct: 120 TDPAYYYPVLYSTAAPAATIQWPTSTDFAYPLAAALQTLPDDMLQELY 167
>At4g17130.1 68417.m02579 hypothetical protein
Length = 747
Score = 27.9 bits (59), Expect = 2.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = -3
Query: 201 HFHHDCWNCIHKCCYHRMYWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCYYRR 37
HF + C+HK Y MY +P C + C + + +H + C++ Y R+
Sbjct: 683 HFLYTWTRCMHKLKYMGMY-VPLCRHVQTCLLS-PFPDIYHKLFFACVYVTYMRK 735
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = +1
Query: 37 PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPA 216
P A T T + PPA PVT T P P VA ++ PPA
Sbjct: 47 PTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVISPATPPPQPPQSPPA 106
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 27.5 bits (58), Expect = 2.8
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Frame = +1
Query: 67 PTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALM--DTVPTVVMEVYHPPAVPV 225
P V VY P PV + PV+P A + T P V VY P PV
Sbjct: 118 PPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPVKPPTKPPVKPPVYPPTKAPV 172
>At4g34930.1 68417.m04952 1-phosphatidylinositol
phosphodiesterase-related contains weak similarity to
1-phosphatidylinositol phosphodiesterase precursor (EC
4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
(Phosphatidylinositol- specific phospholipase C)
(PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
Length = 391
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = +1
Query: 58 DTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQ 237
D+ +VV EV +P + V+P V+ D+ TVV +V + P V Q
Sbjct: 17 DSAKSVVEEVVNPTVSFANNSARTVVEEVVNPTVSFANDSARTVVEKVLN-PTVSFIDSQ 75
Query: 238 TQTXRDQYIR 267
Q RD ++
Sbjct: 76 LQRPRDVLVQ 85
>At3g19430.1 68416.m02464 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 559
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +1
Query: 61 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQT 240
+VP+ V PP P + + T PV P +VP+ V PP P + +
Sbjct: 89 SVPSPTPPVSPPPPTPTPSVPSPTP--PVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPS 146
Query: 241 QT 246
T
Sbjct: 147 PT 148
Score = 27.1 bits (57), Expect = 3.8
Identities = 17/62 (27%), Positives = 25/62 (40%)
Frame = +1
Query: 61 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQT 240
+VP+ V PP P + + T PV P +VP+ V PP P + +
Sbjct: 107 SVPSPTPPVSPPPPTPTPSVPSPTP--PVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPS 164
Query: 241 QT 246
T
Sbjct: 165 PT 166
>At3g50790.1 68416.m05562 late embryogenesis abundant protein,
putative / LEA protein, putative similar to Picea glauca
late embryogenesis abundant protein (EMB8), PID:g1350545
SP|Q40863; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 408
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 202 YHPPAVPVXLIQ---TQTXRDQYIRW*QHLWIQXQQSRWKCI 318
+ PP P+ ++ T +D Y+R H+ ++ Q +W+C+
Sbjct: 117 HFPPDSPILILLPGLTGGSQDSYVR---HMLLRAQSKKWRCV 155
>At1g69280.1 68414.m07943 expressed protein
Length = 400
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -3
Query: 219 NCRWMIHFHHDCWNCIHKCC 160
+C W+ H CW+C CC
Sbjct: 349 SCGWLFCCHWSCWSCC--CC 366
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 12/64 (18%)
Frame = -3
Query: 216 CRWMIHFHHD-CWNCIH-KCCYHRMYWIPR---CLSLNQCYW-------NCRWMIHFHHD 73
C W+ + C++C C + + R C + C W +C W+ H
Sbjct: 300 CSWLCCKNTGPCFSCCRLPSCGYNFFCCKRLKCCPCFSWCRWPSCDYNSSCGWLFCCHWS 359
Query: 72 CWNC 61
CW+C
Sbjct: 360 CWSC 363
>At5g41580.1 68418.m05052 zinc finger (MIZ type) family protein
contains Pfam domain PF02891: MIZ zinc finger
Length = 703
Score = 26.2 bits (55), Expect = 6.6
Identities = 19/61 (31%), Positives = 24/61 (39%)
Frame = +1
Query: 94 PPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVPVXLIQTQTXRDQYIRW* 273
P VPV QT + RD P + + T+P + A PV T R RW
Sbjct: 466 PMPVPVPFSQTPSPRD--RPATTSTVFTIPNPSPQYSQVHASPVTPTGTYLGRTTSPRWN 523
Query: 274 Q 276
Q
Sbjct: 524 Q 524
>At2g27380.1 68415.m03302 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 761
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +1
Query: 37 PAVVALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPP 213
P + + T +Y PP P + + T P++P T PT +Y PP
Sbjct: 46 PPIYGAPPSYTTPPPPIYSPPIYPPPIQKPPTYSPPIYPPPIQKPPT-PTYSPPIYPPP 103
>At1g54970.1 68414.m06278 proline-rich family protein similar to
proline-rich protein GI:170048 from [Glycine max]
Length = 335
Score = 26.2 bits (55), Expect = 6.6
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Frame = +1
Query: 37 PAVVALMDTVPTVVMEVYHPPAVPVTL---IQTQ-TARDPVH-PVVAALMDTVPTVVMEV 201
PA + PT+ VY PP TL + T+ T PV P ++ + T PT+ V
Sbjct: 83 PAYTPPVYNKPTLPAPVYTPPVYKPTLSPPVYTKPTLLPPVFKPTLSPPVYTKPTLSPTV 142
Query: 202 YHPPAVP 222
Y P P
Sbjct: 143 YKPTLSP 149
>At3g62680.1 68416.m07041 proline-rich family protein contains
proline-rich region, INTERPRO:IPR000694
Length = 313
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/54 (29%), Positives = 21/54 (38%)
Frame = +1
Query: 61 TVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALMDTVPTVVMEVYHPPAVP 222
T PT+ VY PP T + + P V PT+ VY P +P
Sbjct: 62 TKPTIPPPVYTPPVYKHTPSPPVYTKPTIPPPVYTPPVYKPTLSPPVYTKPTIP 115
Score = 25.8 bits (54), Expect = 8.7
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Frame = +1
Query: 61 TVPTVVMEVYHPPAVPVTL---IQTQ-TARDPVH--PVVAAL-MDTVPTVVMEVYHPP 213
T PT+ VY PP TL + T+ T PV+ PV + T PT+ VY PP
Sbjct: 86 TKPTIPPPVYTPPVYKPTLSPPVYTKPTIPPPVYTPPVYKPTPVYTKPTIPPPVYTPP 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,462,920
Number of Sequences: 28952
Number of extensions: 89896
Number of successful extensions: 278
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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