Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0636.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22387| Best HMM Match : Methyltransf_5 (HMM E-Value=0)              38   0.003
SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_22387| Best HMM Match : Methyltransf_5 (HMM E-Value=0)
          Length = 408

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 17/30 (56%), Positives = 22/30 (73%)
 Frame = -1

Query: 256 TWRALNKHVDVPTDEEVESNPRSRSARLRA 167
           TW  L+K V  P+D+E+  NPR RSA+LRA
Sbjct: 347 TWLPLHKKVVSPSDDEIFFNPRCRSAKLRA 376



 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -2

Query: 438 KYYLKINGRLVTISFHSLEDXIVKRHI 358
           K  L   GRLV ISFHS ED IVK  +
Sbjct: 302 KKLLTPGGRLVVISFHSAEDSIVKHFL 328


>SB_8792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/69 (24%), Positives = 36/69 (52%)
 Frame = +2

Query: 224 HVNMFI*SPPSVSKNSSIVLLSCTKVGFKYRNGTGLATSLIMLPAICLFTIXSSNEWKLI 403
           H ++F+ S   +  N+   ++S +   F+   GTG +TS +M  ++   T+ S+ +W +I
Sbjct: 224 HNHLFLQSEECLYLNTGD-MVSDSAENFRNCQGTGGSTSPLMTSSVGPSTLVSNKQWVVI 282

Query: 404 VTNLPLIFK 430
                L ++
Sbjct: 283 QVQYSLFYR 291


>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6500

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 309  LNPTLVQDKSTIEEFLDTLGGL*INMLTCPQMKKSKVILE 190
            ++ TL Q K TIE  +DT G   IN       ++S+V L+
Sbjct: 1893 VDDTLDQMKKTIESTIDTFGSKRINYAIITFNRRSQVALD 1932


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,755
Number of Sequences: 59808
Number of extensions: 237767
Number of successful extensions: 417
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)