Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0636.Seq
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical ... 29 2.5
U39851-8|AAF99879.1| 937|Caenorhabditis elegans Hypothetical pr... 28 4.3
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 27 5.7
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 27 5.7
Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical p... 27 10.0
Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical p... 27 10.0
Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical pr... 27 10.0
Z49968-3|CAA90260.1| 189|Caenorhabditis elegans Hypothetical pr... 27 10.0
U32305-8|AAK18853.4| 492|Caenorhabditis elegans Regulator of g ... 27 10.0
AC006827-4|AAF60881.1| 579|Caenorhabditis elegans Hypothetical ... 27 10.0
>AC006808-1|AAF60813.1| 486|Caenorhabditis elegans Hypothetical
protein Y58G8A.1 protein.
Length = 486
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 329 LATSLIMLPAICLFTIXSSNEWKLIVTNLPLI 424
+A+S + PA+ L+ N W L +T LP I
Sbjct: 102 IASSKLWQPALQLYNSARGNSWSLYLTGLPAI 133
>U39851-8|AAF99879.1| 937|Caenorhabditis elegans Hypothetical
protein C23G10.8 protein.
Length = 937
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 250 RALNKHVDVPTDEEVESNPRSRSA 179
R +KH+D PT + V +P SR A
Sbjct: 870 RGRDKHLDTPTKKRVNQSPPSRKA 893
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 81 QHVQIRHCNINSSM*LFI 28
QH+Q CN+NS + LFI
Sbjct: 1070 QHIQTEECNLNSCLELFI 1087
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 81 QHVQIRHCNINSSM*LFI 28
QH+Q CN+NS + LFI
Sbjct: 1070 QHIQTEECNLNSCLELFI 1087
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.5 bits (58), Expect = 5.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 81 QHVQIRHCNINSSM*LFI 28
QH+Q CN+NS + LFI
Sbjct: 1070 QHIQTEECNLNSCLELFI 1087
>Z68748-12|CAN86588.1| 792|Caenorhabditis elegans Hypothetical
protein F13H10.4c protein.
Length = 792
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 342 NEVANPVPLRYLNPTLVQDKSTIEEFLDTL 253
N+VANP L Y+ LV D+ T+ + L
Sbjct: 452 NDVANPPTLFYVMDKLVNDEKTVGRYAGIL 481
>Z68748-10|CAL36500.1| 789|Caenorhabditis elegans Hypothetical
protein F13H10.4b protein.
Length = 789
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 342 NEVANPVPLRYLNPTLVQDKSTIEEFLDTL 253
N+VANP L Y+ LV D+ T+ + L
Sbjct: 449 NDVANPPTLFYVMDKLVNDEKTVGRYAGIL 478
>Z68748-9|CAL36499.1| 796|Caenorhabditis elegans Hypothetical
protein F13H10.4a protein.
Length = 796
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 342 NEVANPVPLRYLNPTLVQDKSTIEEFLDTL 253
N+VANP L Y+ LV D+ T+ + L
Sbjct: 456 NDVANPPTLFYVMDKLVNDEKTVGRYAGIL 485
>Z49968-3|CAA90260.1| 189|Caenorhabditis elegans Hypothetical
protein M110.3 protein.
Length = 189
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 409 SDNKLPFIRRXNCKKAYRWQHNQ 341
SDN L F+ C+ + W H+Q
Sbjct: 24 SDNALSFVHPCRCRGSIHWVHHQ 46
>U32305-8|AAK18853.4| 492|Caenorhabditis elegans Regulator of g
protein signalingprotein 5 protein.
Length = 492
Score = 26.6 bits (56), Expect = 10.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 284 KVQLRSFWIHLEGFK 240
K+ L FW+H+EGFK
Sbjct: 104 KLNLIKFWMHVEGFK 118
>AC006827-4|AAF60881.1| 579|Caenorhabditis elegans Hypothetical
protein Y81B9A.1 protein.
Length = 579
Score = 26.6 bits (56), Expect = 10.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 339 EVANPVPLRYLNPTLVQDKSTIEEFLD 259
E+ANP+ +RY N T +S ++ +LD
Sbjct: 541 ELANPMNVRYNNNTRAHFESHLDRYLD 567
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,548,076
Number of Sequences: 27780
Number of extensions: 197214
Number of successful extensions: 478
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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