Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0636.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10910.1 68418.m01266 mraW methylase family protein contains ...    31   0.33 
At2g30070.1 68415.m03658 potassium transporter (KUP1) identical ...    27   7.0  
At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containi...    27   7.0  

>At5g10910.1 68418.m01266 mraW methylase family protein contains
           Pfam profile PF01795: MraW methylase family
          Length = 434

 Score = 31.5 bits (68), Expect = 0.33
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -2

Query: 417 GRLVTISFHSLEDXIVKR 364
           GRL  ISFHSLED +VK+
Sbjct: 335 GRLAVISFHSLEDRVVKQ 352


>At2g30070.1 68415.m03658 potassium transporter (KUP1) identical to
           potassium transporter [Arabidopsis thaliana]
           gi|2654088|gb|AAB87687; KUP/HAK/KT Transporter family
           member, PMID:11500563
          Length = 712

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 326 GLATSLIMLPAICLFTIXSSNEWKLIVTNLPLIFK*YFG 442
           GLA + +ML   CL T+  +  WK  +  + L F  +FG
Sbjct: 424 GLAVTSVMLVTTCLMTLVMTIVWKQRIITV-LAFVVFFG 461


>At2g15690.1 68415.m01796 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 579

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -2

Query: 450 WCCPKYYLKINGRLVTISFHSLEDXIVKRHIAGNIINEVANPVPLRYLNPTLVQDKSTIE 271
           W   + Y +++G +    +  +E+ +V    +  +IN++  P P  +    +V  KS I 
Sbjct: 408 WEAMRNYARLHGDIDLEDY--MEELMVDVDPSKAVINKIPTPPPKSFKETNMVTSKSRIL 465

Query: 270 EF 265
           EF
Sbjct: 466 EF 467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,556,339
Number of Sequences: 28952
Number of extensions: 171700
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)