Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0635.Seq
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 2.3
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 26 3.1
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb... 26 3.1
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo... 26 3.1
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc... 25 4.1
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 5.4
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 25 7.1
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 25 7.1
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac... 25 7.1
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 24 9.4
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo... 24 9.4
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 2.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 187 FWLGTVLHGIYADNFW 234
FW+ VL G+Y N+W
Sbjct: 357 FWIWIVLPGLYYQNYW 372
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 25.8 bits (54), Expect = 3.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 216 NPMKYGTEPKIRPSSAFFKSMK 151
N MKYG E + RP+ +F+S K
Sbjct: 679 NIMKYGDEIRSRPARTWFQSEK 700
>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 519
Score = 25.8 bits (54), Expect = 3.1
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 158 LLKKAEDGLIFGSVPYFMGFTQITSGISYCQSR*FLAFADPYHIP--GSPVAPTY 316
L++ GL+ GS+PYF + +SY + A PY + SP+ TY
Sbjct: 60 LIQGVPMGLVRGSIPYF-----LKPNVSYSDLATYSLAAYPYSLKVLWSPIVDTY 109
>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1010
Score = 25.8 bits (54), Expect = 3.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 37 ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 174
E WL + R + W++ P++ +S AV V+ L TLF F KGG
Sbjct: 891 ENWLIFITRCSG--PFWSSFPSWQLSGAVLVVDILATLFCIFGWFKGG 936
>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 919
Score = 25.4 bits (53), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +1
Query: 37 ETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFK--KGG 174
E WL + R N W++ P++ +S AV + L T+F F KGG
Sbjct: 803 ENWLIFVTRCNG--PFWSSIPSWQLSGAVLAVDILATMFCIFGWFKGG 848
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 348 AAYAVSKLNLPRYAEPF 398
A Y+VS LN+P Y +P+
Sbjct: 338 AGYSVSDLNIPGYKQPW 354
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 7.1
Identities = 7/14 (50%), Positives = 12/14 (85%)
Frame = -3
Query: 249 WQYEMPEVICVNPM 208
WQ E+P+++C +PM
Sbjct: 131 WQPEVPDMVCHDPM 144
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 24.6 bits (51), Expect = 7.1
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 285 IFLGARLPLHIILXYPAFIYHAAYAVSKLNLPRYAEPFAVGLVTVL 422
IFL A + I +F YH V+ L Y +PF + L ++
Sbjct: 121 IFLSALYLIDPIRLVTSFNYHERIVVNSHMLLFYLKPFVIALPVLI 166
>SPAC1D4.03c |aut12||autophagy associated protein
Aut12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +3
Query: 282 IIFLGARLPLHIILXYPAFIYHAAYAVSKLNL 377
+I + ++ PL+++ P+ AAY +S+LNL
Sbjct: 166 VIVVLSKNPLYLVGVSPSTTLSAAYLLSELNL 197
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 43 WLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHA 159
W V NDI L+ + +Y + V LA L FHA
Sbjct: 286 WFVSDVLVNDIPHLFNSLTSYFSGEGVQKLASDLAEFHA 324
>SPAC22E12.14c |sck2||serine/threonine protein kinase
Sck2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 646
Score = 24.2 bits (50), Expect = 9.4
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +2
Query: 32 RWKRGWIGASEKMTSSN 82
+W + W G S+K S+N
Sbjct: 4 KWAKNWFGLSKKSVSTN 20
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,019,068
Number of Sequences: 5004
Number of extensions: 42008
Number of successful extensions: 90
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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