Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0635.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0295 + 17006064-17007063,17007068-17007666                       29   2.3  
12_02_0291 + 16951154-16952740                                         28   3.0  
01_06_1256 - 35775149-35775590,35775782-35775840                       28   3.0  
12_02_0277 + 16682836-16684368                                         28   4.0  
12_02_0275 + 16662206-16663738                                         28   4.0  
09_02_0045 + 3479503-3480285                                           27   9.2  
08_02_0811 + 21438848-21439001,21439469-21439662,21439769-214398...    27   9.2  
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    27   9.2  

>12_02_0295 + 17006064-17007063,17007068-17007666
          Length = 532

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 28  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 150
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSLVPM 42


>12_02_0291 + 16951154-16952740
          Length = 528

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 28  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTL 150
           A +ETW+ +      +  LW+  P ++  +A Y+++ L+ +
Sbjct: 2   ASVETWVGFGSALAGVGLLWSRMPEHVHDEARYIISSLVPM 42


>01_06_1256 - 35775149-35775590,35775782-35775840
          Length = 166

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 411 PSPPRKAPRNVEDSALRLHT 352
           P PP++  +N ED AL LHT
Sbjct: 8   PFPPKRKRQNGEDGALHLHT 27


>12_02_0277 + 16682836-16684368
          Length = 510

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +1

Query: 28  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 162
           A +ETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


>12_02_0275 + 16662206-16663738
          Length = 510

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 9/45 (20%), Positives = 25/45 (55%)
 Frame = +1

Query: 28  AEMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAF 162
           A +ETW+ +      +  LW+  P ++  +A Y+++ ++ +  ++
Sbjct: 2   ATLETWVGFGSAMAGVGLLWSRMPEHVHEEARYIISSVVPMVMSY 46


>09_02_0045 + 3479503-3480285
          Length = 260

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -2

Query: 265 QKLSTLAIRNA-RSYLRKSHEVRYRAKNKAIFRLF 164
           ++  TL IR   RS+  KS  V+ R KN+A+ RL+
Sbjct: 105 ERQETLLIREKERSHELKSELVKEREKNEALVRLY 139


>08_02_0811 +
           21438848-21439001,21439469-21439662,21439769-21439897,
           21441552-21441671,21441751-21441887,21441969-21442124,
           21442565-21442943,21443041-21443157,21443225-21443371
          Length = 510

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 255 DNFWHSQTPIIFLGARLPLHIILXYPAFIYHAAYAVSKL 371
           D+F  ++     L +++PL ++L  P F Y    AVSK+
Sbjct: 144 DSFPGNERNKYCLSSKVPLGVVLAIPPFNYPVNLAVSKI 182


>06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-273343,
            273427-274124,274921-274969,276059-276112,276244-276275,
            276319-276484,276563-276628,276717-276812,276868-276957,
            277302-277398,277496-277575,277709-277753,278006-278134,
            278593-278722,278888-279222,279918-280053,280149-280328,
            280422-280679,280752-281137
          Length = 1409

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -3

Query: 252  LWQYEMPEVICVNPMKYGTEPKIRPS----SAFFKSMK*C*EASQNVN 121
            +WQ  +  + CVN  K    P+I  S    SA++K M+ C     +VN
Sbjct: 1147 IWQKPINHIECVNSRKIYETPQICKSNDVDSAWYKKMETCISPLPDVN 1194


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,631
Number of Sequences: 37544
Number of extensions: 279187
Number of successful extensions: 630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)