Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0635.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   2e-04
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   28   3.1  
SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)                   27   5.4  
SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   27   5.4  
SB_57938| Best HMM Match : Cadherin (HMM E-Value=0.0027)               27   9.5  
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)                 27   9.5  
SB_26362| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_24439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 15/32 (46%), Positives = 24/32 (75%)
 Frame = +3

Query: 234 AFRIARVDNFWHSQTPIIFLGARLPLHIILXY 329
           ++ +  VDNFWH+Q+ ++ +  RLPLHI+L Y
Sbjct: 131 SYFVPDVDNFWHAQSMVMLVEKRLPLHIVLFY 162



 Score = 30.7 bits (66), Expect = 0.58
 Identities = 10/46 (21%), Positives = 26/46 (56%)
 Frame = +1

Query: 31  EMETWLDWCVRKNDIKQLWAAQPTYIISQAVYVLAGLLTLFHAFKK 168
           ++  ++ W V   + +++W  +PT+++ + V++L   +T  H   K
Sbjct: 4   DVSAFVKWFVIFRNPQEIWREEPTFLMCEIVFLLIAAMTFRHETPK 49


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 335 IYLPRSVCSLKAESSTLRGAFRGGL 409
           ++ P SVCS KA    L GA+ GG+
Sbjct: 687 LFEPMSVCSTKAVEKILAGAWAGGV 711


>SB_40091| Best HMM Match : CNH (HMM E-Value=8.5e-07)
          Length = 653

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 11/45 (24%), Positives = 26/45 (57%)
 Frame = -3

Query: 240 EMPEVICVNPMKYGTEPKIRPSSAFFKSMK*C*EASQNVNGLRYY 106
           EM + +C++P+  G + ++R ++ +   +  C    QNV  +++Y
Sbjct: 287 EMEQCLCLSPLGSGFDSRLRLNNPYNSQLYLCVALPQNVLLMQWY 331


>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 408  SPPRKAPRNVEDSALRLHTLRGK*MRDTXKLY 313
            S PR+A RN+ +S   LH    K + D  + Y
Sbjct: 1093 STPRRAGRNISESVRHLHNTLTKILSDQERAY 1124


>SB_57938| Best HMM Match : Cadherin (HMM E-Value=0.0027)
          Length = 164

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +1

Query: 31  EMETWLDWCVRKNDIKQLWAAQP-TYIISQAVYVLAGLLTLFHAFKKGGRWPYFW 192
           EM+   D  VR  D + L+     T IIS+   +  G+  +  AFK+   W  F+
Sbjct: 70  EMKLLYDIVVRATDTRGLYKEMTLTIIISECFVIRKGIFVVLQAFKE---WTLFF 121


>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 2497

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 103  YIISQAVYVLAGLLTLFHAFKKGGRWPYFWLGTVLHGIYADNF 231
            Y ++ AV + +G  T+F++ + G      WL ++L     D F
Sbjct: 1577 YFLAFAVVITSGAFTIFYSMQWGTEISNQWLSSMLVSFVQDLF 1619


>SB_26362| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 305 APTYNFXVSRIYLPRSVCSL--KAESSTLRGAFRGGLG 412
           APT+N    R  +PRS+  L  K+ S  +R  FRG  G
Sbjct: 263 APTFNLQRLRKCVPRSIRHLDGKSGSGNIRVRFRGRSG 300


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,218,264
Number of Sequences: 59808
Number of extensions: 310390
Number of successful extensions: 981
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)