Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0635.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   4.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   8.2  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 331 GYXKIICRGNRAPRNMIGVCECQ 263
           G   +IC  N   + +IGV ECQ
Sbjct: 8   GASVLICLLNETAKAIIGVDECQ 30


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 231 EVICVNPMKYGTEPKIRPSSAFFKSMK*C 145
           E I V+P + G E K +P+S    +++ C
Sbjct: 161 EEIRVDPFRTGFEHKRQPTSIDLNAVRLC 189


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 231 EVICVNPMKYGTEPKIRPSSAFFKSMK*C 145
           E I V+P + G E K +P+S    +++ C
Sbjct: 161 EEIRVDPFRTGFEHKRQPTSIDLNAVRLC 189


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 416  SNQAHRERLRVTWKIQL*DCIR 351
            SNQ   + L V   +Q  DCIR
Sbjct: 1631 SNQCEGDSLNVAKSLQDHDCIR 1652


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 263 LAFADPYHIPGSPVAP 310
           LA A+PY+  G+ V+P
Sbjct: 889 LALAEPYNQRGTVVSP 904


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 263 LAFADPYHIPGSPVAP 310
           LA A+PY+  G+ V+P
Sbjct: 927 LALAEPYNQRGTVVSP 942


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 54  PIQPRFHLRSSS 19
           P+QPRF+  SSS
Sbjct: 893 PLQPRFYSISSS 904


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,585
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)