Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0635.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1) ident...    29   1.5  
At4g14605.1 68417.m02247 mitochondrial transcription termination...    29   1.9  
At2g31740.1 68415.m03876 expressed protein                             27   7.7  

>At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1)
           identical to magnesium/proton exchanger AtMHX
           [Arabidopsis thaliana] gi|6492237|gb|AAF14229;
           Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 539

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 73  IKQLWAAQPTYIISQAVYVLAGLLTLFHAFKKGGRWPYFWL 195
           I ++W+     ++   + VL   L L HA+ +  RWPY  L
Sbjct: 187 ILEVWSPNVITLVEALLTVLQYGLLLVHAYAQDKRWPYLSL 227


>At4g14605.1 68417.m02247 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 444

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 222 CVNPMKYGTEPKIRPSSAFFKSM 154
           C N M Y  E K+RP+  +F+S+
Sbjct: 327 CPNIMSYSVEDKLRPTMEYFRSL 349


>At2g31740.1 68415.m03876 expressed protein
          Length = 760

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 120 RLRFGWPLNIISCF*KRRKMALFL 191
           R RFGW +N+ S   KR K+  ++
Sbjct: 191 RFRFGWKMNVHSIAQKRSKLKTYM 214


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,592,175
Number of Sequences: 28952
Number of extensions: 218844
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)