Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0634.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    40   0.023
UniRef50_A1S029 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding ...    34   1.5  
UniRef50_A7SFV7 Cluster: Predicted protein; n=1; Nematostella ve...    33   4.7  
UniRef50_Q5GZS4 Cluster: Putative uncharacterized protein; n=9; ...    32   8.2  
UniRef50_Q2QN08 Cluster: Transposon protein, putative, Mutator s...    32   8.2  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 40.3 bits (90), Expect = 0.023
 Identities = 18/25 (72%), Positives = 21/25 (84%)
 Frame = +3

Query: 195 FLSIRYVDELVAHLVLSGYRARRHL 269
           FL +R+VDEL AHLVLSGY + RHL
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSPRHL 178


>UniRef50_A1S029 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding
           domain protein; n=2; Archaea|Rep: 4Fe-4S ferredoxin,
           iron-sulfur binding domain protein - Thermofilum pendens
           (strain Hrk 5)
          Length = 182

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 451 QTRKIIICEITGGRTSCESAAHFCHEAVINAFR 353
           +TRK I+C++ GG   C  A   CHEA  +A R
Sbjct: 122 ETRKAIVCDLCGGEPECVKA---CHEAGFDALR 151


>UniRef50_A7SFV7 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 428

 Score = 32.7 bits (71), Expect = 4.7
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +3

Query: 102 VIKVNNKLVQLIVRV*GIKIKFTINVIVFVFFLSIRYVDELVAHLVLSGYRARRHLQH 275
           VI + N  +  +  V  I  KF I+ ++FVF   I Y       L+L G R RRH QH
Sbjct: 289 VINILNSSMPKVSYVKSID-KFLISCLIFVFLSLIEYC----VILILDGKRTRRHQQH 341


>UniRef50_Q5GZS4 Cluster: Putative uncharacterized protein; n=9;
           Xanthomonas|Rep: Putative uncharacterized protein -
           Xanthomonas oryzae pv. oryzae
          Length = 1414

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 255 ARRHLQHKCRHLPS--DISSKVSAFTVQRLPHPSNRNALI 368
           ARRH+Q  C  LPS  +++ +  A  VQ LPH  +   LI
Sbjct: 775 ARRHIQMTCGQLPSQDELAMQALAECVQWLPHEQSATELI 814


>UniRef50_Q2QN08 Cluster: Transposon protein, putative, Mutator
           sub-class, expressed; n=10; Magnoliophyta|Rep:
           Transposon protein, putative, Mutator sub-class,
           expressed - Oryza sativa subsp. japonica (Rice)
          Length = 638

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = -1

Query: 472 IAPRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLEL 302
           +A  N+    +I I +I GG  + E  A FC+  ++    ++   +RC   AE LE+
Sbjct: 58  VASTNEESNDEIDISDIPGGPAAFEICAKFCYGMIVTLNAYNVLAARCA--AEYLEM 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 421,711,400
Number of Sequences: 1657284
Number of extensions: 7301766
Number of successful extensions: 18300
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18297
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)