Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0634.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    28   0.90 
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   4.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   6.3  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    25   6.3  
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    25   8.4  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   8.4  

>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 0.90
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = +3

Query: 222 LVAHLVLSGYRARRHLQH--KCRHLPSDISSK 311
           +V +LVLS +  RR +QH  K R++P DI  K
Sbjct: 148 VVYYLVLSFFCFRRQIQHMLKYRYVPFDIGKK 179


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 162 KFTINVIVFVFFLSIRY--VDELVAHLVLSGYRARRHLQ---HKCRHLPSDISSK 311
           + +++ I  VFF+S+    + +     + SG   R  L    HKC++  +D+S K
Sbjct: 248 ELSLDAIRIVFFMSVSAGNLGDTALSYLYSGTAVRMSLAIGLHKCKNFSNDLSDK 302


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 385  FCHEAVINAFRFDGWGSR 332
            +C+E  IN +    WGSR
Sbjct: 2005 YCYEGPINNYMIKSWGSR 2022


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 320 FYSTTAAPSVEPKRINYCFMAEMGSGLTRGPTTSYFANYNFAG 448
           F+S   A S  P  +     A+M    TRGP    FA   FAG
Sbjct: 194 FFSGFCASS--PLSVVAAAFADMFDNKTRGPAVCIFACITFAG 234


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 261 YEPGNHLTPGGPRVRL 214
           Y+P  H TPGGP++ L
Sbjct: 363 YKPKLHGTPGGPKLSL 378


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 308  QGLSFYSTTAAPSVEPKRINYCFMAEMGSGLTRGPTTSYFANYNF 442
            QGL+     A  +V   + N    + +GSG+ +   T+Y ANY+F
Sbjct: 1902 QGLTASEAVAKGAVGWNQTN----SSIGSGIIQPRDTNYTANYSF 1942


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,756,684
Number of Sequences: 5004
Number of extensions: 30253
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)