Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0634.Seq
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50589| Best HMM Match : Neur_chan_memb (HMM E-Value=9.2e-05)        33   0.17 
SB_31365| Best HMM Match : Neur_chan_memb (HMM E-Value=1.5e-06)        33   0.17 
SB_15304| Best HMM Match : Herpes_UL49_5 (HMM E-Value=1.3)             32   0.30 
SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.2  
SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_28685| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_31742| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_19822| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_50589| Best HMM Match : Neur_chan_memb (HMM E-Value=9.2e-05)
          Length = 131

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +3

Query: 102 VIKVNNKLVQLIVRV*GIKIKFTINVIVFVFFLSIRYVDELVAHLVLSGYRARRHLQH 275
           VI + N  +  +  V  I  KF I+ ++FVF   I Y       L+L G R RRH QH
Sbjct: 62  VINILNSSMPKVSYVKSID-KFLISCLIFVFLSLIEYC----VILILDGKRTRRHQQH 114


>SB_31365| Best HMM Match : Neur_chan_memb (HMM E-Value=1.5e-06)
          Length = 213

 Score = 32.7 bits (71), Expect = 0.17
 Identities = 22/58 (37%), Positives = 29/58 (50%)
 Frame = +3

Query: 102 VIKVNNKLVQLIVRV*GIKIKFTINVIVFVFFLSIRYVDELVAHLVLSGYRARRHLQH 275
           VI + N  +  +  V  I  KF I+ ++FVF   I Y       L+L G R RRH QH
Sbjct: 111 VINILNSSMPKVSYVKSID-KFLISCLIFVFLSLIEYC----VILILDGKRTRRHQQH 163


>SB_15304| Best HMM Match : Herpes_UL49_5 (HMM E-Value=1.3)
          Length = 166

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 177 VIVFVFFLSIRYVDELVAHLVLSGYRARRHLQHKCRHL--PSDISSKVSAFTVQRL 338
           VIV +FF+S+  VD    H+ +     RRH   + RH   P   +S  +A T   L
Sbjct: 8   VIVLLFFISVAIVDVESFHIGVGKVMKRRHFSRRRRHFIQPGGSTSSRAAATAVEL 63


>SB_6796| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +3

Query: 198 LSIRYVDELVAHLVLSGYRARRHLQHKCRHLPSDISSKVSAFTVQRLPHP 347
           L +   DEL   L  S     + LQ+   H PSD+ S  S  T+ +LP P
Sbjct: 314 LDLASTDELETILASSTKVKAKPLQNGEIHEPSDVDSSDSVETISQLPSP 363


>SB_53316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
 Frame = +3

Query: 162 KFTINVIVFVFFLSIRYVDELVAHLVLSGYRARRHLQH-------KCRHLPSDISSKVSA 320
           + T  + + + F  IR +     +LV+  Y    H Q         C +LPS I S+VSA
Sbjct: 6   RITSEIPMIIIFFEIRVIINNAPYLVVDDYILISHQQEIEEALSKVCGYLPSSIRSEVSA 65

Query: 321 FTVQRLPHPSNRNALITASWQK 386
               RLP  + + A IT   Q+
Sbjct: 66  --KARLP-TARKGAWITHGAQR 84


>SB_28685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +3

Query: 216 DELVAHLVLSGYRARRHLQHKCRHLPSDISSKVSAFTVQRLPHP 347
           DEL   L  S     + LQ+   H PSD+ S  S  T+ +LP P
Sbjct: 25  DELETILASSTKVKAKPLQNGEIHEPSDVDSSDSVETISQLPSP 68


>SB_47506| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/70 (24%), Positives = 34/70 (48%)
 Frame = +3

Query: 123 LVQLIVRV*GIKIKFTINVIVFVFFLSIRYVDELVAHLVLSGYRARRHLQHKCRHLPSDI 302
           +V +++R+  + +   I ++V V  + I  V   +   V S     RHL+ +C+ +  D 
Sbjct: 169 MVVMVIRM--VVVVMVIRMVVVVMVIRIVVVVMSLEQDVESQKSMVRHLEKRCKQIELDA 226

Query: 303 SSKVSAFTVQ 332
             +VS   +Q
Sbjct: 227 QERVSRMRLQ 236


>SB_31742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 165 FTINVIVFVFFLSIRYVDELVAHLVLSGYRAR-RHLQHKC 281
           F + V  F  F ++R    +V   V+ GYRAR R+  H C
Sbjct: 14  FDVRVREFDHFAAVRADQVIVVIAVIEGYRARIRNHGHSC 53


>SB_19822| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 246 GYRARRHLQHKCRHLPSDISSKVSAFTVQRLPHP 347
           GYR   HL      +P+DI  +   + V    HP
Sbjct: 146 GYRGNEHLLGTLVDIPTDIKKQSGRYVVNHATHP 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,009,270
Number of Sequences: 59808
Number of extensions: 236465
Number of successful extensions: 538
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)