Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0634.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.1  

>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 350 EPKRINYCFMAEMGSGLTRGPTTSYFANYN 439
           EPK   + F AE  +GL +GP T+Y A +N
Sbjct: 552 EPKY--FIFDAEK-TGLGKGPRTTYCAFWN 578


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 161 YFYALDTND*LNQFIVNFNHFL*KFSVTIN 72
           Y Y   T D +NQ++      L  FS TIN
Sbjct: 283 YVYEDSTYDDINQWVYPLTGCLYYFSTTIN 312


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 333 RLPHPSNRNALITASWQKWAADSQEVLPPVI 425
           R  H   R  ++++      AD + V+PPVI
Sbjct: 210 RTMHRLTRQVVVSSVANVRIADHRGVMPPVI 240


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 333 RLPHPSNRNALITASWQKWAADSQEVLPPVI 425
           R  H   R  ++++      AD + V+PPVI
Sbjct: 210 RTMHRLTRQVVVSSVANVRIADHRGVMPPVI 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,148
Number of Sequences: 438
Number of extensions: 2270
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)