Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0634.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23050.1 68415.m02748 phototropic-responsive NPH3 family prot...    30   0.75 
At2g14820.1 68415.m01679 phototropic-responsive NPH3 family prot...    30   1.00 
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ...    29   1.3  
At4g37590.1 68417.m05320 phototropic-responsive NPH3 family prot...    29   1.7  
At2g40280.1 68415.m04958 dehydration-responsive family protein s...    28   4.0  
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot...    27   7.0  
At4g23080.1 68417.m03327 expressed protein predicted protein, Ar...    27   7.0  
At3g51070.1 68416.m05592 dehydration-responsive protein-related ...    27   7.0  
At1g79460.1 68414.m09261 ent-kaurene synthase / ent-kaurene synt...    27   7.0  
At1g11320.1 68414.m01300 expressed protein identical to hypothet...    27   7.0  
At4g01840.1 68417.m00241 outward rectifying potassium channel, p...    27   9.3  

>At2g23050.1 68415.m02748 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 481

 Score = 30.3 bits (65), Expect = 0.75
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -1

Query: 457 KNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLEL 302
           KNQ  +I I EI GG  + E    FC+   +    ++    RC   AE LE+
Sbjct: 68  KNQIDEIDISEIPGGSVAFEICVKFCYGITVTLNAYNVVAVRCA--AEFLEM 117


>At2g14820.1 68415.m01679 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 634

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -1

Query: 472 IAPRNKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVK 320
           ++  +KN    I I  I GG T+ E+ A FC+   +    ++   +RC  +
Sbjct: 58  LSSTDKNNIDDIDISGIPGGPTAFETCAKFCYGMTVTLSAYNVVATRCAAE 108


>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
           identical to DNA Helicase [Arabidopsis thaliana]
           GI:11121445
          Length = 705

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 42  LKVMQATPNKVNRDRKFLQKVIKVNN 119
           LK++  TP KV++ ++F+ K+ K +N
Sbjct: 182 LKILYVTPEKVSKSKRFMSKLEKCHN 207


>At4g37590.1 68417.m05320 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 580

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 442 KIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLEL 302
           +I I EI GG  S E  A FC+   +    ++   +RC   AE LE+
Sbjct: 79  EIEIAEIPGGPASFEICAKFCYGMTVTLNAYNVVAARCA--AEFLEM 123


>At2g40280.1 68415.m04958 dehydration-responsive family protein
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 589

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 201 SIRYVDELVAHLVLSGYRARRHLQHKCRHLP 293
           S+ Y+  L  +  +   ++RRH++H+ RH P
Sbjct: 88  SVDYIPCLDNYAAIKQLKSRRHMEHRERHCP 118


>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 571

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -1

Query: 460 NKNQTRKIIICEITGGRTSCESAAHFCHEAVINAFRFDGWGSRCTVKAETLELMSE 293
           ++ +T +I I ++ GG  + E  A FC+   +    ++    RC   AE LE+  +
Sbjct: 62  SEEKTDEITILDMPGGYKAFEICAKFCYGMTVTLNAYNITAVRCA--AEYLEMTED 115


>At4g23080.1 68417.m03327 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 244

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 300 CLKVGDGIYVVDVYEPGNHL-TPGGPR 223
           C KVGD IY+ D +    HL   GGP+
Sbjct: 216 CYKVGDTIYMQDSWRNVGHLIVYGGPK 242


>At3g51070.1 68416.m05592 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 895

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 252 RARRHLQHKCRHLPSD 299
           R+RRH +H+ RH P D
Sbjct: 396 RSRRHFEHRERHCPED 411


>At1g79460.1 68414.m09261 ent-kaurene synthase / ent-kaurene
           synthetase B (KS) (GA2) identical to GI:3056725
           [PMID:9536043]; formerly called ent-kaurene synthetase B
          Length = 785

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +3

Query: 270 QHKCRHLPSDISSKVSAFT---VQRLPHPSNRNALITASWQKWAADSQ 404
           + K R +   +   VSA+    V  +P PS++NA +     KW  D+Q
Sbjct: 39  KEKIRKMLEKVELSVSAYDTSWVAMVPSPSSQNAPLFPQCVKWLLDNQ 86


>At1g11320.1 68414.m01300 expressed protein identical to
           hypothetical protein GB:AAD49990 GI:5734725 from
           [Arabidopsis thaliana]
          Length = 424

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
 Frame = +3

Query: 186 FVFFLSIRYVDELVAHLVLSGYRARRHLQHKCRHL-------PSDISSKVSAFTVQRLPH 344
           FVF  S+R  D LVA LV     A  H       L        +DI+   SA  +    H
Sbjct: 121 FVFETSLRETDRLVAELVAGYNGAGSHRDFLGGELSLAKVFYKADINDWFSAIAIPVGAH 180

Query: 345 PSNRNALITASWQKWA-ADSQEVLPPVISQ 431
             +  A   +S+Q  +  +  E+ PP++SQ
Sbjct: 181 FRDIEASTVSSYQGMSLTEVSELGPPLLSQ 210


>At4g01840.1 68417.m00241 outward rectifying potassium channel,
           putative (KCO5) identical to KCO5 protein [Arabidopsis
           thaliana] gi|6522947|emb|CAB62162; similar to kco1
           [Arabidopsis thaliana] gi|2230761|emb|CAA69158; member
           of the 2 pore, 4 transmembrane (2P/4TM) K+ channel
           family, PMID:11500563
          Length = 408

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 204 IRYVDELVAHLVLSGYRARRHLQHKCRH 287
           + YV +L   ++L+G + R+H QH   H
Sbjct: 199 VNYVLDLQESMILTGIQTRQHHQHHHHH 226


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,017,753
Number of Sequences: 28952
Number of extensions: 157823
Number of successful extensions: 411
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)