Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0632.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   3.6  
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   3.6  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   6.3  

>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +1

Query: 97  DSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 201
           D+E   K PVD PSD    S  DD  S   P + +
Sbjct: 284 DNEDEKKPPVDTPSDEAINSDLDDPDSDEAPETEE 318


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -3

Query: 476 FVWHTDSVLSPEVLFTSTGWFARQYDAYSSNTMALPILR 360
           +V  TD  +  E + T   WF  QYD+Y  N     ++R
Sbjct: 90  YVLWTDESMR-EFIATDYPWFLTQYDSYPYNIERADVVR 127


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 250 WLRVCS*IYICRLALDSRRSQASDSLTGHRIGSLDSNQKDSPRGT 116
           WLRV     ICR  +D    Q +++ T    G   SN  +    T
Sbjct: 426 WLRVNGTCAICRAPVDPNSQQRNNTSTDSANGHNPSNHANPSTST 470


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,157,903
Number of Sequences: 5004
Number of extensions: 46476
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)