Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0632.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 32 0.22
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871 31 0.68
01_01_0935 - 7377917-7378009,7378418-7378551,7378635-7379043,737... 31 0.68
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 30 0.90
01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872 30 0.90
09_06_0200 + 21539963-21541271,21541912-21542013,21542095-215422... 30 1.2
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 30 1.2
06_02_0276 + 13678457-13678734,13679592-13679931,13680025-136802... 29 1.6
01_06_0233 + 27735881-27736238,27736337-27736453,27736559-277367... 29 1.6
06_01_0113 + 886899-886906,887029-887107,887390-887458,887547-88... 29 2.7
10_08_1025 - 22391267-22391767,22392641-22392736,22392838-223931... 28 3.6
06_03_0079 - 16301056-16301611,16301745-16301906,16306776-163071... 28 4.8
04_04_0202 - 23573425-23573949,23574285-23574593 28 4.8
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 28 4.8
01_06_1733 + 39537618-39537722,39537865-39538028,39539796-395401... 28 4.8
01_05_0783 + 25183361-25185628 28 4.8
10_08_0462 - 18116135-18116785 27 6.3
06_03_0297 + 19267491-19267677,19267799-19267843,19268466-192685... 27 6.3
05_04_0202 - 19010953-19013355 27 6.3
05_02_0115 - 6758540-6758771,6759417-6759524,6759670-6759840,675... 27 6.3
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 27 6.3
10_08_0477 - 18188280-18188490,18188572-18188748,18189141-181893... 27 8.4
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 27 8.4
06_02_0225 + 13257655-13260693 27 8.4
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916 27 8.4
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 27 8.4
03_04_0174 - 18044516-18046327 27 8.4
03_01_0655 + 4797516-4797624,4797716-4798485,4798988-4799049,479... 27 8.4
01_01_0353 - 2802779-2802794,2802901-2802962,2803458-2803844 27 8.4
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.3 bits (70), Expect = 0.22
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = +1
Query: 85 PPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKC 225
PPC +K P DC C C+ PKP + P P C C
Sbjct: 87 PPCKPPPC-EKPPEDCKPKPCHCCSCEKPKPKPKPCHCEKPKP-CHC 131
>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
Length = 177
Score = 30.7 bits (66), Expect = 0.68
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Frame = +1
Query: 118 CPVDC--PSDYCPTSRCDDQSSCPKPASADCPAP 213
CP C P + P C D+ CP P CP P
Sbjct: 109 CPCSCSTPCSFPPIG-CHDRGICPPPCPPPCPLP 141
>01_01_0935 -
7377917-7378009,7378418-7378551,7378635-7379043,
7379929-7380051
Length = 252
Score = 30.7 bits (66), Expect = 0.68
Identities = 26/102 (25%), Positives = 45/102 (44%)
Frame = +1
Query: 160 CDDQSSCPKPASADCPAPACKCRFNYRRATNGHAYRLENALPLIVTVIMKSTIPAPLSAP 339
C ++ S K ASA PAPA + + A + E+ +P V I+ + PAP++ P
Sbjct: 64 CTNRVSAVKSASAK-PAPAI--------SRHESAPQKESVIPPKVLSIVPTAAPAPVTVP 114
Query: 340 XXXXXXXXXMGSAIVLEE*ASYCRANQPVDVKSTSGDRTESV 465
G ++ ++E S C + + D + + SV
Sbjct: 115 CSSFVSPMHSGDSVSVDETMSMCDSMKSPDFEYIDNGDSSSV 156
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 30.3 bits (65), Expect = 0.90
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Frame = -2
Query: 261 CMSVGCASVVESTFA----GWRWTVGARRLRTA*LVI-----ASARW 148
CM+VGCA+V + A G R+ ARRLR A L A+ARW
Sbjct: 243 CMAVGCAAVCDEDVAQRLLGGRYPGAARRLRGALLASYVEDNAAARW 289
>01_06_0333 + 28528413-28529364,28529504-28529539,28529800-28530872
Length = 686
Score = 30.3 bits (65), Expect = 0.90
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 461 DSVLSPEVLFTSTGWFARQYDAYSSNTMALPILRRLRTALTGAE 330
DS +PEV+ T G + + D YS M L ++R R GA+
Sbjct: 568 DSYDAPEVVSTKFGAVSSKSDVYSYGVMVLEMIRAKRRINVGAD 611
>09_06_0200 +
21539963-21541271,21541912-21542013,21542095-21542291,
21542396-21542603,21542685-21542922,21543010-21543160,
21543538-21543849
Length = 838
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +1
Query: 106 ILDKCPVDC-PSDYC-PTSRCDDQSSCPKPASADCPAPACKCRFNYRRAT 249
+L + P C P D+C P CD +A+ P PAC+C + A+
Sbjct: 282 VLQEWPAGCDPYDFCGPNGYCDS-------TAAEAPLPACRCLDGFEPAS 324
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +1
Query: 70 DDVTEPPCADSEILD-KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACK 222
D T C+DS++ KCP D C+D C + + CP +CK
Sbjct: 488 DGKTFSACSDSDLSGCKCPPGFKGDGL---HCEDVDECSEKLACSCPHCSCK 536
>06_02_0276 +
13678457-13678734,13679592-13679931,13680025-13680243,
13680328-13680420
Length = 309
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 448 LQKYFLHLQAGLHGN-TMPILPTRWHSPSSVACEQLSP 338
+Q+Y L L A L N P++P PSS AC + +P
Sbjct: 27 IQRYLLQLHACLDENGPRPVIPLSHGDPSSSACFRTAP 64
>01_06_0233 +
27735881-27736238,27736337-27736453,27736559-27736713,
27736796-27736870,27736934-27737242,27737431-27737742,
27737844-27738218
Length = 566
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -2
Query: 465 HRLRPVSRSTFYIYRLVCTAIRCLFFQHDGTPHPPSPANSSHRGREGGRDC 313
H LR S F R + + F +P PP P++SS RG GR C
Sbjct: 5 HLLRGHSLDRFLPIRSLIMSSSSSF--SSSSPSPPPPSSSSSRGSSSGRWC 53
>06_01_0113 +
886899-886906,887029-887107,887390-887458,887547-887636,
887725-887863,888466-888568,888664-888716,888801-888867,
889147-889255,889499-889567,889676-889745,889833-889952,
890052-890201,890611-890873
Length = 462
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = -1
Query: 463 QTPSCLQKYFLHLQAGLHGNTM--PILP--TR-WHSPS 365
+ PS F+ ++A HGNTM P+ P TR WH+P+
Sbjct: 403 RVPSLASDKFVDMKARTHGNTMKRPLPPVGTRTWHAPA 440
>10_08_1025 -
22391267-22391767,22392641-22392736,22392838-22393106,
22393257-22393431,22393503-22393718,22393819-22393926,
22394020-22394544,22394631-22394819,22394924-22395041,
22395172-22395437,22395521-22395658
Length = 866
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = -2
Query: 387 QHDGTPHPPSPANSSHRGREGGRDCTLHYHRHNQRE 280
QH G PP A S G GG YHRH +
Sbjct: 96 QHSGHDQPPDAAQPS--GAAGGNAKKKRYHRHTAHQ 129
>06_03_0079 -
16301056-16301611,16301745-16301906,16306776-16307134,
16307372-16307884
Length = 529
Score = 27.9 bits (59), Expect = 4.8
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +1
Query: 82 EPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRATNGHA 261
+P A S DK ++ ++ PT SS SA P P RR +GH
Sbjct: 277 QPITAASASKDKNSLNLATELSPTGNLLPSSSLRHEPSAKRPLPISSSSDAKRRVLSGHG 336
Query: 262 Y 264
Y
Sbjct: 337 Y 337
>04_04_0202 - 23573425-23573949,23574285-23574593
Length = 277
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 279 PPFDCDGDNEEYNPCPPLCP 338
PP D DGD ++Y P PP P
Sbjct: 221 PPDDDDGDIDDYVPAPPPDP 240
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 433 LHLQAGLHGNTMPILPTRWHSPSSV 359
+HL LHGN P RW P+ +
Sbjct: 336 VHLNPLLHGNAQQFQPCRWEMPNKL 360
>01_06_1733 +
39537618-39537722,39537865-39538028,39539796-39540102,
39540914-39541221,39541421-39541580
Length = 347
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 124 VDCPSDYCPTSRCDDQSSCPK-PASADCPAPACKCR 228
+DC S C T C + + PA+A CPA A CR
Sbjct: 214 MDCLSHIC-TEGCTEVGPVGRAPAAAPCPAYATACR 248
>01_05_0783 + 25183361-25185628
Length = 755
Score = 27.9 bits (59), Expect = 4.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 327 GGRDCTLHYHRHNQREGIL*SVCMSVGCASVVESTFA 217
GG +C+L+ N +E +L S+ + GCA S +A
Sbjct: 107 GGGECSLNPGPFNMKEHVLVSIFANAGCAFGSGSAYA 143
>10_08_0462 - 18116135-18116785
Length = 216
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 115 KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRATNG 255
KC SD C T R Q C P S+ P PA ++ R +G
Sbjct: 68 KCNRAHGSDCCVTGRRYPQFRCSPPVSSARPTPATLTLNSFARGGDG 114
>06_03_0297 +
19267491-19267677,19267799-19267843,19268466-19268542,
19268652-19268774,19269029-19269133,19269217-19269289,
19269588-19269690,19269890-19270144,19270996-19271125,
19271278-19271352,19271470-19271550
Length = 417
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 297 GDNEEYNPCPPLCPGESCSQATEDGECH 380
GD+ + P PP C + A + +CH
Sbjct: 20 GDDGSHKPLPPCCLKAKAAAAESEAKCH 47
>05_04_0202 - 19010953-19013355
Length = 800
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 372 PHPPSPANSSHRGREGGR 319
P PP+P S RGR GGR
Sbjct: 5 PAPPTPLGSCPRGRGGGR 22
>05_02_0115 -
6758540-6758771,6759417-6759524,6759670-6759840,
6759967-6760077,6760562-6760663,6761139-6761366,
6761568-6761696,6761753-6761869,6761955-6762301,
6762377-6762931,6763104-6763182,6763429-6763595,
6763857-6764075,6764956-6765139,6765175-6765371,
6765717-6766035,6766379-6766538,6767642-6767794,
6767911-6768013
Length = 1226
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 70 DDVTEPPCADSEILDKCPVDCPSDYCPTS-RCDDQSSCP-KPASAD 201
D V EPP + E + +D P + TS D S C +P+ AD
Sbjct: 580 DSVAEPPLTEQEKVVSNGMDAPDELAGTSVNLDSTSHCEGEPSRAD 625
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 133 PSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRATNGHAYRLENALPLIVTVIMKS 312
PS P R P A+AD +P F++ ++ AY+L + LP V+
Sbjct: 43 PSTPAPARRVVVSHRLPLRAAADAASPF---GFSFTVDSDAVAYQLRSGLPPGAPVLHIG 99
Query: 313 TIPAP 327
T+P P
Sbjct: 100 TLPPP 104
>10_08_0477 -
18188280-18188490,18188572-18188748,18189141-18189304,
18189667-18189720,18190572-18191054
Length = 362
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -2
Query: 381 DGTPHPPSPANSSHRGREGGRDC 313
D P P SPA++ HR R R C
Sbjct: 17 DAAPTPASPAHAQHRRRRRRRMC 39
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 97 DSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRA 246
D E + PV+CP +S D P+P S+ P+ + YR A
Sbjct: 2 DGESPEIMPVECPDPEPASSESGDDHDIPEPLSSRLSVPSGELNL-YRAA 50
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 419 WFARQYDAYSSNTMALP-ILRRLRTALTGAER 327
W R+YD + +LP ++RR AL ER
Sbjct: 339 WIKREYDEFKIRVNSLPDLIRRRANALNARER 370
>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
Length = 234
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/54 (27%), Positives = 22/54 (40%)
Frame = +1
Query: 55 KADATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPA 216
K A TEPP + S + T D ++ +P++ D PAPA
Sbjct: 23 KTKALSHSTEPPLSASSAPRRAAAKDAKIGTETPAADGDAARKRPSAGDAPAPA 76
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 27.1 bits (57), Expect = 8.4
Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Frame = +3
Query: 198 RLSSASLQM*IQLQTRNQRTCIP--TRECPPFDCDGDNEEYNPCPPLCPGESCSQATEDG 371
++ +A + M QL ++T IP T E G Y PP PGE C G
Sbjct: 394 KVPTALVLMLAQLCVFIEQTAIPKVTEELASSFSGGGARSYEYGPPFVPGEICRLYRSSG 453
Query: 372 E 374
E
Sbjct: 454 E 454
>03_04_0174 - 18044516-18046327
Length = 603
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -2
Query: 387 QHDGTPHPPSPANSSHRGREGGRDCTLHYHRHN 289
QH +P PP + S+ G +H HN
Sbjct: 17 QHAASPSPPDQPHKSYPSSRGSTSSPSSHHTHN 49
>03_01_0655 +
4797516-4797624,4797716-4798485,4798988-4799049,
4799267-4799336,4799971-4800058,4801070-4801227,
4801316-4801459,4801561-4801689,4801797-4801964
Length = 565
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/39 (38%), Positives = 16/39 (41%)
Frame = +3
Query: 315 NPCPPLCPGESCSQATEDGECHRVGRIGIVLPCKPACRC 431
+P PP P SC A E C G GI P C C
Sbjct: 11 SPAPPRAPAASCGAAAELCLCSPTGVEGI--EQVPGCPC 47
>01_01_0353 - 2802779-2802794,2802901-2802962,2803458-2803844
Length = 154
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 22 IVLTAAWLVVAKADATDDVTEPPCADSEILDKCPVDCPSD 141
+V TA W A DD E ++ +LDKC V +D
Sbjct: 101 VVSTALWFTKAVGVWEDDDDEDDSDEATMLDKCSVKVYTD 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,797,499
Number of Sequences: 37544
Number of extensions: 399199
Number of successful extensions: 1720
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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