Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0632.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083) 33 0.099
SB_6496| Best HMM Match : Collagen (HMM E-Value=0) 32 0.30
SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 1.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_43785| Best HMM Match : WAP (HMM E-Value=2e-05) 29 2.1
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044) 28 3.7
SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12) 28 3.7
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 28 3.7
SB_27178| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 28 4.9
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11) 28 4.9
SB_3300| Best HMM Match : Activin_recp (HMM E-Value=0.15) 28 4.9
SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_29922| Best HMM Match : DUF1047 (HMM E-Value=7.3) 27 6.5
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0) 27 6.5
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0) 27 6.5
SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_42888| Best HMM Match : EGF (HMM E-Value=8.4e-20) 27 6.5
SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08) 27 6.5
SB_33213| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 6.5
SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 6.5
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08) 27 8.6
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_19442| Best HMM Match : Beach (HMM E-Value=0) 27 8.6
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 27 8.6
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004) 27 8.6
SB_9714| Best HMM Match : RnaseH (HMM E-Value=0.0016) 27 8.6
SB_8425| Best HMM Match : EGF (HMM E-Value=0) 27 8.6
>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
Length = 337
Score = 33.5 bits (73), Expect = 0.099
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Frame = +1
Query: 58 ADATDDVTEPPCA-DSEILDKCPVDCPSDYCPTSRCDDQS-SCPKPASA----DCPAPAC 219
A +D + PP A +S+ + PV C SD P+S +S P P A D P+P
Sbjct: 82 AYGSDGIPSPPVACESDGIPSSPVACESDGIPSSLVACESDGIPSPLVACKFDDIPSPPV 141
Query: 220 KCRFN 234
C+F+
Sbjct: 142 ACKFD 146
>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1234
Score = 31.9 bits (69), Expect = 0.30
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -1
Query: 367 SSVACEQLSPGQRGGQGLYSSLSPSQSKGGHSLVGMHVRW 248
S A Q S G RG QG + P G + LVG+ VRW
Sbjct: 509 SGPAGPQGSAGPRGEQGFTGNPGPDGKNGKNVLVGLGVRW 548
>SB_59417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 31.1 bits (67), Expect = 0.53
Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Frame = +3
Query: 246 NQRTCIPTRECPPFDCDGDNEEYNPCPPLCPGESCS-----QATEDGECHRVGRIGIVLP 410
N + R+C F C GD E+ CP E CS Q ED +C ++G+
Sbjct: 249 NTNRFVTKRKCEAF-CQGDVEQSKKCPVSASSEVCSAPGVDQCLEDQDC----QMGLKC- 302
Query: 411 CKPACRCK 434
CK C K
Sbjct: 303 CKVGCERK 310
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +3
Query: 246 NQRTCIPTRECPPFDCDGDNE--EYNPCPPLCPGESCSQ---ATEDGEC 377
N CIP + CDGDN+ + + PP C G SC+ + +G C
Sbjct: 18 NNGRCIPMS----WRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRC 62
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 103 EILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACK 222
E + CP C CP C D + CP A+C ACK
Sbjct: 1719 ECKESCPKVCGPG-CPVQCCSDLNICP----ANCTGSACK 1753
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Frame = +1
Query: 76 VTEPPCADSEILDKCPVDCPSDYCPTSRCDD-QSSCPKPASADCPAPAC 219
V P C+ + CP C + R + + SCPK CP C
Sbjct: 1689 VCPPNCSAQSCGNFCPPKCCTSQLSKDRQKECKESCPKVCGPGCPVQCC 1737
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +1
Query: 109 LDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPAC 219
+ C DCP+ C T + S+CP S D P C
Sbjct: 1649 VSSCKPDCPARCCTT---EPLSACPATCSPDSCRPEC 1682
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Frame = +1
Query: 109 LDKCPVDCPSDYC----PTSRCDDQSSCPKPASADCPAPACK 222
L KC CPS C P C SC + DCP CK
Sbjct: 1778 LTKCLPSCPSTCCIKNSPPVVCP--KSCETTCTPDCPVMCCK 1817
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Frame = +1
Query: 91 CADSEILDKCPVDCPSDYC-PTSRCDDQSSCPKPASAD-----CPAPACKCRFNYRR 243
C +E L CP C D C P S CP SA CP C + + R
Sbjct: 1660 CCTTEPLSACPATCSPDSCRPECPLICCSVCPPNCSAQSCGNFCPPKCCTSQLSKDR 1716
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +3
Query: 321 CPPLCPGESCSQATEDGECHRVGRI--GIVLPCKPAC 425
C P CP + CS+ T+ G + +L C+P+C
Sbjct: 1881 CTPDCPKKCCSKPTKVGSAPTSSQCPSSCLLACQPSC 1917
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Frame = +1
Query: 100 SEILDKCPVDCPSDY----CPTSRCDDQSSCPKPASADCPAPAC 219
S L CP C D+ CPT C + ++A CP+ AC
Sbjct: 1364 SNALSSCPQSCSGDHCGAECPTQCCLLADNGQHSSTASCPS-AC 1406
Score = 27.5 bits (58), Expect = 6.5
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Frame = +1
Query: 91 CADSEILDKCPVDCPSDYC---PTSRCDDQSSCPKPAS-----ADCPAPAC 219
C S D C +CP+ C + +SCP S DCPA C
Sbjct: 1370 CPQSCSGDHCGAECPTQCCLLADNGQHSSTASCPSACSPSGCNPDCPARCC 1420
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Frame = +3
Query: 282 PFDCDGDNEEYNPCPPLCPGESCSQA---TEDGECHRVGRIGIVL-PCKPACRCK 434
P +C DN C P CP E C ++ + H+ G + CKP C K
Sbjct: 1312 PQECSTDN-----CKPSCPSECCLTVLTPLKENKSHQEGCPAVCSESCKPDCPIK 1361
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = +3
Query: 255 TCIPTRECPPFDCDGDNEEYNPCPPLCPGESCSQATEDGECHRVGRIGIVLPCKPACRCK 434
TC + PP C E C P CP C ++ EC + + C C CK
Sbjct: 1788 TCC-IKNSPPVVCPKSCE--TTCTPDCPVMCCKNSSPATECPTICASKCISKCPEKC-CK 1843
Query: 435 K 437
+
Sbjct: 1844 Q 1844
>SB_43785| Best HMM Match : WAP (HMM E-Value=2e-05)
Length = 103
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 318 PCPPLCPGESCSQATEDGEC 377
P PP CP E+ + DGEC
Sbjct: 32 PAPPECPPEAKDECATDGEC 51
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 29.1 bits (62), Expect = 2.1
Identities = 25/73 (34%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Frame = +3
Query: 294 DGDNEEYNPCPPLCPGESCSQATEDG---ECHRVGRIGIVLPCKPACRCKKYFWRQD--- 455
DGD E C G +CS+ G CHR G+ AC C WR D
Sbjct: 1863 DGDGSEVCKCDSGYWGAACSRECPGGALSPCHRHGQCD---TRSGACAC-DLNWRGDAAC 1918
Query: 456 GVCVPYEQCKECS 494
G C P ECS
Sbjct: 1919 GSCTPGWTGSECS 1931
>SB_35833| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1032
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 34 AAWLVVAKADATDD-VTEPPCADSEILDKCPVDCPSDYCPTSRCDDQ 171
A W +V TDD + + +DS D P+DC S+ SR + +
Sbjct: 446 ATWQIVGDIPQTDDDIRDGEPSDSATEDVAPLDCASEEEEESRSESK 492
>SB_1496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 514
Score = 28.7 bits (61), Expect = 2.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 172 SSCPKPASADCPAPAC 219
+SCP P A CP P C
Sbjct: 479 ASCPPPGCASCPLPGC 494
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 73 DVTEPPCADSEILDKCPVD-CPSDYCPTSRCDDQSSCPKPASADCPAPA 216
DV C D CP C S CP C +SC P A CP P+
Sbjct: 466 DVLVVYCQDVPGCASCPPPGCAS--CPLPGC---ASCQPPGCASCPGPS 509
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 145 CPTSRCDDQSSCPKPASADCPAPAC 219
CP C +SCP P A C P C
Sbjct: 481 CPPPGC---ASCPLPGCASCQPPGC 502
>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
Length = 933
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = -1
Query: 430 HLQAGLHGN--TMPILPTRWHSPSSVACEQLSPGQRGGQGLYSSLSPSQSKGGH 275
H+ GL + T+P LP H P + C+Q S + GQ + S +P+ ++ GH
Sbjct: 874 HIYKGLVDDLSTLPHLP---HKPQT-PCKQSSQQEGAGQANHRSSTPASAQYGH 923
>SB_6520| Best HMM Match : MANEC (HMM E-Value=2.2e-12)
Length = 452
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 112 DKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPAC 219
+ CP P+ C ++ C D +SCP A C C
Sbjct: 158 EDCPPGAPTAMCSSNPC-DVASCPGHPYASCKPSFC 192
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 246 NQRTCIP-TRECPPF-DCDGDNEEYNPCPPLCPGESCSQATED 368
N C+P T C DC +E+N CP PG++ ++A +D
Sbjct: 956 NGAKCLPLTWLCDSITDCMDSKDEHN-CPATIPGKTLARAAQD 997
>SB_27178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 366 DGECHRVGRIGIVLPCKPACRCKKYFWRQDGVCVPYEQCKE 488
DG+C+ LP C CK F ++DGVC +C +
Sbjct: 58 DGKCYN-------LPGTYECLCKPGFEKRDGVCKDINECAQ 91
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Frame = +1
Query: 91 CADSEILDKCPV--DCPSDY-CPTSRCDDQSSCPKPASADCPAPACKCRFNYRRATNGHA 261
C DS+ +DKC DC + C C PKP A+ R Y HA
Sbjct: 487 CLDSDAIDKCQTDRDCQDQFKCCFDGCRYNCILPKPDPAEHSTCPVMSRIPYMCNPTTHA 546
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 396 LFFQHDGTPHPPSPANSSHRGREGGR 319
L F+HDGT P P +SS + + GR
Sbjct: 38 LNFKHDGTDVPQPPPSSSKKSKGRGR 63
>SB_3371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1135
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 88 PCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAP 213
PCA CP C Y P + P PA+A CP P
Sbjct: 844 PCAPPPATALCPTPC---YGPVPHHLLRPCAPPPATALCPTP 882
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 88 PCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAP 213
PCA CP C Y P + P PA+A CP P
Sbjct: 869 PCAPPPATALCPTPC---YGPVPHPLLRPCAPPPATALCPTP 907
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 88 PCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAP 213
PCA CP C Y P + P PA+A CP P
Sbjct: 894 PCAPPPATALCPTPC---YGPVPHPLLRPCAPPPATALCPTP 932
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +1
Query: 88 PCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAP 213
PCA CP C Y P + P PA+A CP P
Sbjct: 919 PCAPPPATALCPTPC---YGPVPHPLLRPCAPPPATALCPTP 957
>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
Length = 1012
Score = 27.9 bits (59), Expect = 4.9
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +1
Query: 61 DATDDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASAD 201
D+ D T PPC DS+ P C SD+ TS CD + P ++D
Sbjct: 317 DSDRDQT-PPC-DSDHDQTSP--CDSDHDQTSPCDSDHNQTSPRNSD 359
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Frame = +1
Query: 61 DATDDVTEPPCADSEILDKCPVD------CPSDYCPTSRCDDQSSCPKPASAD 201
D+ D T P +D + C D C SD+ TS CD + P ++D
Sbjct: 527 DSDHDQTSPCDSDHDQTSPCDSDHDQTSPCDSDHDQTSPCDSDHNQTSPRNSD 579
>SB_3300| Best HMM Match : Activin_recp (HMM E-Value=0.15)
Length = 281
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/49 (24%), Positives = 18/49 (36%)
Frame = +1
Query: 70 DDVTEPPCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPA 216
D + C ++ D V PT D+ +SC P + C A
Sbjct: 11 DSIWPTGCCHGDMFDNGTVPARDSLWPTGSRDEPASCENPVTRSCGVDA 59
>SB_50164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1780
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 187 PASADCPAPACKCRFNYRRATNGH 258
P+ +C P C +F R+A NGH
Sbjct: 996 PSLFECDFPDCSAKFVSRQALNGH 1019
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 94 ADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPA 216
AD + CP C +YC + P+ A+A PAPA
Sbjct: 1228 ADEWVQLNCPKMC--NYCTDKSSTAKQDIPQSAAAPAPAPA 1266
>SB_29922| Best HMM Match : DUF1047 (HMM E-Value=7.3)
Length = 210
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 450 VSRSTFYIYRLVCTAIRCLFFQHD 379
V + FYIY+++ TA+ L F+ D
Sbjct: 165 VQATNFYIYKVMATAVDALMFKSD 188
>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1050
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 14/51 (27%)
Frame = +1
Query: 145 CPTSR------CDDQSSCPKPASADCPAPA--------CKCRFNYRRATNG 255
CP+ R C D + C PA +CP CKCR Y + NG
Sbjct: 404 CPSGRTGDGVSCADINECADPADNNCPQECENTLGGYKCKCRPGYISSNNG 454
>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 868
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 14/51 (27%)
Frame = +1
Query: 145 CPTSR------CDDQSSCPKPASADCPAPA--------CKCRFNYRRATNG 255
CP+ R C D + C PA +CP CKCR Y + NG
Sbjct: 230 CPSGRTGDGVSCADINECADPADNNCPQECENTLGGYKCKCRPGYISSNNG 280
>SB_54921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 450 VSRSTFYIYRLVCTAIRCLFFQHD 379
V + FYIY+++ TA+ L F+ D
Sbjct: 57 VQATNFYIYKVMATAVDALMFKSD 80
>SB_53581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1584
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -1
Query: 475 SYGTQTPSCLQKYFLHLQAGL--HGNTMPILPTRWHSPSSVACEQLSPG 335
S G S Q Y ++Q G HGNT P + +SV E SPG
Sbjct: 279 SPGDALKSYTQSYTNNVQTGARNHGNTFTGYPRSYPRTNSVQAEVSSPG 327
>SB_42888| Best HMM Match : EGF (HMM E-Value=8.4e-20)
Length = 167
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 115 KCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPACKCRFNY 237
+C V +C RC D C A+A+C C CR+ Y
Sbjct: 115 QCDVRYTGPHCEVDRCAD---CD--ANAECCDGHCTCRYGY 150
>SB_38004| Best HMM Match : CXCXC (HMM E-Value=5.5e-08)
Length = 240
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 411 CKPACRCKKYFWRQDGVCVPYEQCKEC 491
C PA RC Y WR C +C+ C
Sbjct: 160 CSPAQRCPLYRWRNPNTC--QCECQPC 184
>SB_33213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 450 VSRSTFYIYRLVCTAIRCLFFQHD 379
V + FYIY+++ TA+ L F+ D
Sbjct: 11 VQATNFYIYKVMATAVDALMFKSD 34
>SB_28925| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 792
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 130 CP-SDYCPTSRCDDQSSCPKPASADCPAPACKCRFNYRRATN 252
CP Y P++ +CP+ ++ + +C+C Y RA N
Sbjct: 149 CPRGTYKPSAGNATCVACPRNSAPEADRTSCRCTSGYFRAAN 190
>SB_6200| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 683
Score = 27.5 bits (58), Expect = 6.5
Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Frame = +3
Query: 276 CPPFDCDGDNEEYNP------CPPLCPGESCSQATEDGECHRVGRIGIVLPCK---PACR 428
C P DC G N +P CP G +C + + R G C+
Sbjct: 74 CRPCDCKGPNSVCDPVSGECECPANTVGRTCEPCQCNNSTDKCLRSGECRDCQHNTTGFY 133
Query: 429 CKKYFWRQDGVCVPYEQCKECSC 497
C K G +QCK C C
Sbjct: 134 CDKCVTGTYGNATA-QQCKACDC 155
>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
Length = 1381
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 375 CHRVGRIGIVLPCKPACRCKKYFWRQDGVCVPYEQCKEC 491
C+ G + P PA + K+ WR G C Y + +C
Sbjct: 417 CNGCGELDCSPPAPPADQGHKWVWRHCGDCNRYFRTGKC 455
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +2
Query: 113 TSAPWTVLLITVQRADAMTSQAVRSLRAPTVQRQPANVDSTTDAQPTDMHTD*RMPS 283
T P T L T Q T+ + S R PT +Q +T T T +PS
Sbjct: 175 TKQPSTALTTTKQPTTQQTTTNLPSTRQPTTNQQTTTTLPSTKQPTTTQQTTTTIPS 231
>SB_19442| Best HMM Match : Beach (HMM E-Value=0)
Length = 796
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 469 GTQTPSCLQKYFLHLQAGLHGNTMPILPTRWHSPS 365
GT P LQKYF H+Q+ H + R H P+
Sbjct: 254 GTNQPRALQKYFPHVQS--HRERARHVRGRTHGPA 286
>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 160 CDDQSSCPKPASADCPAPACKCRFNYRRATNGHAYR 267
CD+ + P ADCP PA K R GH+++
Sbjct: 166 CDNPA--PAYGGADCPGPANKTRSCNEHPCPGHSFQ 199
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 27.1 bits (57), Expect = 8.6
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +1
Query: 88 PCADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPASADCPAPA 216
PC + L PV+ + YC + C SSCP P+S P A
Sbjct: 825 PCQSGKKLVN-PVNPGATYC--TPCPAGSSCPTPSSPRVPCTA 864
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.1 bits (57), Expect = 8.6
Identities = 26/87 (29%), Positives = 31/87 (35%), Gaps = 12/87 (13%)
Frame = +3
Query: 258 CIPTREC-PPFDCDGDN-----------EEYNPCPPLCPGESCSQATEDGECHRVGRIGI 401
C P REC PP +C EEY+P P E CS +GEC
Sbjct: 88 CSPPRECSPPGECSTPEKCSPHGECYAPEEYSPLGGYSPPEECS---PNGECFPSEECSP 144
Query: 402 VLPCKPACRCKKYFWRQDGVCVPYEQC 482
P C + G C P E+C
Sbjct: 145 PGEYYPPEECSPH-----GECPPPEEC 166
>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
Length = 610
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 378 GTPHPPSPANSSHRGREGG 322
GTPHPP P +H R+GG
Sbjct: 170 GTPHPPPPV--THDQRQGG 186
>SB_9714| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 700
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -3
Query: 383 TMALPILRRLRTALTGAERGAGIVLFIITVTIKGRAFSSR 264
T+ LRR + +L + G++ F +V I GRAF R
Sbjct: 481 TLITEFLRRKKVSLRELQSLVGLLNFACSVVIPGRAFLRR 520
>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
Length = 1955
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +1
Query: 91 CADSEILDKCPVDCPSDYCPTSRCDDQSSCPKPAS 195
C D KC CPS Y RC+ S CP P S
Sbjct: 1119 CVDLPNEFKCV--CPSGY-EGRRCEHASGCPSPKS 1150
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,760,453
Number of Sequences: 59808
Number of extensions: 431273
Number of successful extensions: 1605
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1595
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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