Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0631.Seq
         (508 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|R...    54   2e-06
UniRef50_Q96A83 Cluster: Collagen alpha-1(XXVI) chain precursor;...    38   0.17 
UniRef50_UPI0000D9A6E9 Cluster: PREDICTED: similar to putative e...    37   0.30 
UniRef50_Q2LRU4 Cluster: Hypothetical exported protein; n=1; Syn...    35   0.92 
UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;...    33   4.9  

>UniRef50_P07856 Cluster: Sericin 1 precursor; n=4; Bombyx mori|Rep:
            Sericin 1 precursor - Bombyx mori (Silk moth)
          Length = 1186

 Score = 54.0 bits (124), Expect = 2e-06
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = -2

Query: 258  KICLCFENIFDIPYHLRKNIGV 193
            KICLCFENIFDIPYHLRKNIGV
Sbjct: 1165 KICLCFENIFDIPYHLRKNIGV 1186


>UniRef50_Q96A83 Cluster: Collagen alpha-1(XXVI) chain precursor;
           n=25; Euteleostomi|Rep: Collagen alpha-1(XXVI) chain
           precursor - Homo sapiens (Human)
          Length = 441

 Score = 37.5 bits (83), Expect = 0.17
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 497 NQDXVPKALPYSHPXPIRRAPTVPAAP 417
           N+D +P A+P +HP P +R PT PA P
Sbjct: 177 NEDFLPDAIPLAHPVPRQRRPTGPAGP 203


>UniRef50_UPI0000D9A6E9 Cluster: PREDICTED: similar to putative
           emu2; n=1; Macaca mulatta|Rep: PREDICTED: similar to
           putative emu2 - Macaca mulatta
          Length = 500

 Score = 36.7 bits (81), Expect = 0.30
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 497 NQDXVPKALPYSHPXPIRRAPTVPAAP 417
           N+D  P A+P +HP P +R PT PA P
Sbjct: 218 NEDFFPDAIPLAHPGPRQRRPTGPAGP 244


>UniRef50_Q2LRU4 Cluster: Hypothetical exported protein; n=1;
           Syntrophus aciditrophicus SB|Rep: Hypothetical exported
           protein - Syntrophus aciditrophicus (strain SB)
          Length = 394

 Score = 35.1 bits (77), Expect = 0.92
 Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 442 EHRQCQQXRI-PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVF 311
           EH+Q  Q +  PPQ +P Q QP Q    PR +Q   TLP  R VF
Sbjct: 258 EHQQIPQPQQRPPQVQPQQGQPRQQ---PRQLQPQHTLPQSREVF 299


>UniRef50_A7RBY3 Cluster: Putative uncharacterized protein c530R;
           n=1; Chlorella virus AR158|Rep: Putative uncharacterized
           protein c530R - Chlorella virus AR158
          Length = 79

 Score = 32.7 bits (71), Expect = 4.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 411 HLKHVRGKHNHFRQFFYLGRFKYIGRFLHF 322
           H +H R    HFR F + G F++ G F HF
Sbjct: 16  HFRHFR-HFRHFRHFRHFGHFRHFGHFGHF 44


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,880,610
Number of Sequences: 1657284
Number of extensions: 8426584
Number of successful extensions: 17851
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17833
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)