Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0631.Seq
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  

>SB_38543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 426 WHCRCSSYRXWMTVR*RFWD 485
           W CRC++++   T R R WD
Sbjct: 184 WRCRCANHQSQKTTRRRVWD 203


>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 412 PPQARPGQAQPLQAVLLPRAVQVHRTLPPLRLVFPGVI 299
           P  +RP  A P     LP+   V R LP L  VFPG++
Sbjct: 318 PSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355


>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 295 QA*TDFYTSLVKENMPLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 152
           Q+   +Y   VKE +     H+ +    P   RC I+LN  WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784


>SB_18654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 392

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 266 GQGKYAFASKTYSIFLTISVRISVFNTTKHDLEYSL 159
           G   YA+ +++   FLT      VFN+T  DL+  L
Sbjct: 200 GAANYAWVNRSSMTFLTRQAFAKVFNSTPDDLDMHL 235


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,617,726
Number of Sequences: 59808
Number of extensions: 276248
Number of successful extensions: 461
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)