Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0630.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   147   9e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   147   9e-37
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       29   0.39 
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.2  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   2.1  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    26   2.7  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.6  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.8  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    25   4.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   4.8  
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo...    25   4.8  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   4.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    25   4.8  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   8.4  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   8.4  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  147 bits (356), Expect = 9e-37
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 201 SSEALEAGRICCNKYLVK 254
           +SEALEA RIC NKYLVK
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  123 bits (297), Expect = 1e-29
 Identities = 56/80 (70%), Positives = 64/80 (80%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMSVRS 439
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G V RV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRT 140

Query: 440 SDRWKAQVIEALXLAKFKFP 499
            D  +A  IEAL   ++KFP
Sbjct: 141 KDSSRATAIEALRRCQYKFP 160


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  147 bits (356), Expect = 9e-37
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1   MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60

Query: 201 SSEALEAGRICCNKYLVK 254
           +SEALEA RIC NKYLVK
Sbjct: 61  TSEALEAARICANKYLVK 78



 Score =  123 bits (297), Expect = 1e-29
 Identities = 56/80 (70%), Positives = 64/80 (80%)
 Frame = +2

Query: 260 GKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMSVRS 439
           GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G V RV IGQ +MSVR+
Sbjct: 81  GKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRT 140

Query: 440 SDRWKAQVIEALXLAKFKFP 499
            D  +A  IEAL   ++KFP
Sbjct: 141 KDSSRATAIEALRRCQYKFP 160


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +3

Query: 45  YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
           Y+   N     ++FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+
Sbjct: 34  YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93

Query: 222 G 224
           G
Sbjct: 94  G 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 102 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 221
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 228 ICCNKYLVKTAERISSISA*DFTL 299
           ICC KY V T  R + I    FTL
Sbjct: 9   ICCAKYFVNTKSRFNEILPPRFTL 32


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 136 RERPLTTFHCACTWCPTNMNS 198
           R RP +T H +CT+C   + S
Sbjct: 459 RSRPDSTSHASCTYCVARLRS 479


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1038

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 394  STLRLAKRTTHPSLEPISSS 335
            +T +LAKR T PSL P  S+
Sbjct: 957  TTTKLAKRITQPSLSPARST 976



 Score = 25.0 bits (52), Expect = 6.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 283 ADMELILSAVFTRYLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSK 119
           AD    L A   R+LLQ++     +  +    S  +  T S +SS V+   P+S+
Sbjct: 125 ADESARLWAEKRRFLLQKLGKDPNSKPIDYKSSMASSSTRSSQSSQVSAIQPQSQ 179


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 134 LTQIEDTDLGIRYTPTEPRFRIRFIFAVPVASCWPAPH 21
           L Q++++ L +  T T P   +R      V SC+P  H
Sbjct: 408 LHQLQNSILRVNSTLTSPSLDLRLELLHDVLSCFPKKH 445


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -3

Query: 221  CLQSL*AQLFIFVGHQVHAQWKVVNGRSLLTQIEDTDLG 105
            CL  L   L   + H++ ++W+ +N R LL + +  + G
Sbjct: 940  CLLPLLPALLSELDHKLVSEWRRINDRGLLVEEDAEETG 978


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 263 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 367
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
 Frame = -2

Query: 237 CSRYVLPP-KP-LSSAVHIRRTPSARTVESRQRS------LSSYPNRRYGSWDQVHPDRT 82
           C++ + PP KP + SA+      S  T E    S      LS    +R+ +W    P   
Sbjct: 494 CAKKIQPPFKPSVESAIDTSNFDSEFTSEIPMDSVVADSHLSETVQQRFANWSYQRPTTI 553

Query: 81  SISDTVYFCSTGSIL 37
             SD +   + GS++
Sbjct: 554 DTSDDINTIAPGSVI 568


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
           Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +1

Query: 88  VGVYLIPRSVSSIWV 132
           +GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 123  DLGKKRATVDDFPLCVHLVSDEYEQL 200
            ++ KKRA  DD    + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 78  SRFCRGVPDPKIRIFDLGKKRATVDDFP-LCVHLVSDE 188
           S FC   PDPK       K  A  DD P +  H+ S++
Sbjct: 84  SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 354 RLGCVVRLASLRVLXHVFALDXPSCPCALV 443
           R+GC +  + L ++ +V  L    CP AL+
Sbjct: 252 RIGCEIEASVLFIMGNVLFLCEMECPGALI 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,224
Number of Sequences: 5004
Number of extensions: 46296
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)