Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0630.Seq
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 136 7e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 131 3e-31
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 125 2e-29
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 1.6
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 1.6
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 2.1
07_03_0011 + 12370624-12370684,12372573-12372718,12372793-123731... 28 4.8
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089... 27 6.3
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 27 6.3
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 6.3
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934... 27 8.4
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 136 bits (330), Expect = 7e-33
Identities = 60/80 (75%), Positives = 67/80 (83%)
Frame = +3
Query: 21 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 201 SSEALEAGRICCNKYLVKTA 260
SSEALEA RI CNKY+ K A
Sbjct: 61 SSEALEAARIACNKYMTKNA 80
Score = 125 bits (302), Expect = 2e-29
Identities = 58/83 (69%), Positives = 66/83 (79%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMS 430
K+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT RV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 431 VRSSDRWKAQVIEALXLAKFKFP 499
VR + EAL AKFKFP
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFP 160
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 131 bits (316), Expect = 3e-31
Identities = 57/76 (75%), Positives = 64/76 (84%)
Frame = +3
Query: 33 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEA 212
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 213 LEAGRICCNKYLVKTA 260
LEA RI CNKY+ K A
Sbjct: 372 LEAARIACNKYMAKHA 387
Score = 123 bits (296), Expect = 9e-29
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMS 430
K GKD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT RVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 431 VRSSDRWKAQVIEALXLAKFKFP 499
VR D A EAL AKFKFP
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFP 467
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 125 bits (301), Expect = 2e-29
Identities = 58/83 (69%), Positives = 64/83 (77%)
Frame = +2
Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMS 430
K GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT RV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 431 VRSSDRWKAQVIEALXLAKFKFP 499
VR EAL AKFKFP
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFP 156
Score = 117 bits (281), Expect = 6e-27
Identities = 51/73 (69%), Positives = 60/73 (82%)
Frame = +3
Query: 42 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEA 221
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 222 GRICCNKYLVKTA 260
RI CNKY+ K+A
Sbjct: 64 ARIACNKYMTKSA 76
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Frame = -1
Query: 316 DADNVERVKSHADMELILSAVFTRYLLQQIR-----PASKASELSCSYSSDTKCTHSGKS 152
+ DN+ V AD L+++A +++Q + PA+ A+ C+ S TK H G+
Sbjct: 143 NCDNLPVVPLGADQPLVMAACKRAAVIKQQQQASSSPATAAAAAQCAVPSSTKAIHVGEE 202
Query: 151 STVA 140
+ ++
Sbjct: 203 AHIS 206
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.5 bits (63), Expect = 1.6
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -2
Query: 423 MXCPMRTRXTVP*GLPNAPRIPVWSLSAPAH 331
+ CP+ + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 144 TVDDFPLC-VHLVSDEYEQLSSEALEAGRICCNKYLVK 254
T D P C +HL SD Y S E ++AG+ C L K
Sbjct: 587 TTDWNPRCDIHLKSDGYTNYSLETVQAGKQQCKAALQK 624
>07_03_0011 +
12370624-12370684,12372573-12372718,12372793-12373129,
12374323-12374452,12375346-12375406,12375572-12375618,
12376873-12376950,12377195-12377345,12377495-12377558,
12377735-12377893,12378007-12378128,12378952-12378981,
12379050-12379124,12379563-12379644,12379809-12379938,
12381417-12382164,12382833-12383054,12383127-12383276,
12384851-12384904,12384985-12385058,12386130-12386204,
12386365-12386584
Length = 1071
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +1
Query: 13 RSPWGAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTFHCACTWCP 183
R+ A Q +TGT K + R G + L + V ++ P+ F AC W P
Sbjct: 199 RASKSAWSQSSTGTRKWMQYRPAGETSLTLPCQGVLNLIATGPTPMDVF--ACAWSP 253
>12_02_0957 +
24807261-24807311,24807436-24807773,24808727-24808927,
24809024-24809069,24809284-24809600,24809949-24810072,
24810465-24810537,24810968-24811173,24811384-24811651,
24811780-24811877,24812116-24812379
Length = 661
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 250 TRYLLQQIRPASKASELSCSYSSDTKCTHSGKSS 149
+R+ ++ P+ ELSC ++T C H G S
Sbjct: 85 SRFKVRIFNPSGCEKELSCVMMNNTPCGHEGSMS 118
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 311 G*RGKGEVSCGYGTD--PFRSLYEVLIAADTSCLQSL 207
G R E SC Y + P +L E+L+ A+T C L
Sbjct: 231 GMRAVSEFSCTYSLEDLPLETLLEILVFANTFCCDRL 267
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 162 VESRQRSLSSYPNRRYGSWDQVHPDRTSISDTVYFCSTG 46
+ S + + S GSW H D +++ DT+ CS+G
Sbjct: 758 MNSSNQQIGSPSEEDLGSWGH-HSDPSTVPDTILQCSSG 795
>05_03_0184 +
9339939-9340896,9341003-9341083,9341166-9341383,
9341796-9342019,9342409-9343096
Length = 722
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Frame = +3
Query: 162 LCVHLVSDEYEQLSSEALEAGRICCNKYLV---KTAERISSISA*DFTLSTLSASIK 323
+C + + ++ + A R+CCN+ + +TA+ IS + ++S+LS+S K
Sbjct: 314 ICAKIPGSPGKPPTARFVSALRVCCNRENILNQETAQNISKVVTWKRSVSSLSSSSK 370
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,463,314
Number of Sequences: 37544
Number of extensions: 343240
Number of successful extensions: 921
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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