Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0630.Seq
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 68 4e-12
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09) 31 0.70
SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31) 29 1.6
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84) 29 2.1
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31) 29 2.1
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 29 2.8
SB_4321| Best HMM Match : Ank (HMM E-Value=0) 28 3.7
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05) 28 4.9
SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0) 27 6.5
SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11) 27 8.6
SB_24238| Best HMM Match : RecR (HMM E-Value=3.7) 27 8.6
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09) 27 8.6
SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4) 27 8.6
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 68.1 bits (159), Expect = 4e-12
Identities = 33/46 (71%), Positives = 36/46 (78%)
Frame = +2
Query: 362 MRGAFGKPQGTVXRVRIGQXIMSVRSSDRWKAQVIEALXLAKFKFP 499
MRGAFGKPQGTV RV IGQ I+S+R+ D KA IEAL AKFKFP
Sbjct: 1 MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFP 46
>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
Length = 730
Score = 30.7 bits (66), Expect = 0.70
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = -1
Query: 319 IDADNVERVKSHADMELILSAVFTRYLLQQIRPASKASELSCSYSSDTK 173
+ A+ V+R+ SH M+ + S + Y +PA+K + L C Y+ K
Sbjct: 16 LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63
>SB_57196| Best HMM Match : ADAM_spacer1 (HMM E-Value=3.1e-31)
Length = 718
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 25 GAGQQDATGTAKINRIRNRGSVGVYLIPRSVSSIWVRRERPLTTF 159
G G T N++ +G V LIP+ +I VR +P T+F
Sbjct: 313 GNGTACYTVEGSFNQLAGKGYVEAALIPKGARNIRVREVKPCTSF 357
>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 698
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -2
Query: 216 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 100
PK SS V+ RT AR ++R++ Y ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331
>SB_56325| Best HMM Match : Ribosomal_L14e (HMM E-Value=0.84)
Length = 650
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 244 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 113
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 252 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 294
>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
Length = 1273
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 244 YLLQQIRPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 113
Y+++QI+ ASK L + T C + K S V F+ K K R
Sbjct: 1020 YIVKQIQVASKVKVLKAKLENQTLCQQT-KRSKVTDFISKQKSR 1062
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -3
Query: 413 QCEHVXQYPEACQTHHASQSGAYQLQRMITFY*CG*RGKGEVSCGYG 273
+C V Q P AC + S GA + Y C K V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581
>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
Length = 915
Score = 28.3 bits (60), Expect = 3.7
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 48 RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 227
R CK K ++R C+G + R+ K D+ +C SDE E + R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499
Query: 228 IC 233
+C
Sbjct: 500 MC 501
>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
Length = 726
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +1
Query: 370 CVWQASGYCXTCSHWTXHHV 429
C W +G C C HW HV
Sbjct: 79 CYWIRTGCCHLCWHWRPLHV 98
>SB_58023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +3
Query: 246 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 359
L+ + +++ ++ D T+ST + ++C + ++L+G RL
Sbjct: 726 LICSKQKLRKLAGKDLTVSTENGQLECVNEVKLLGIRL 763
>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
Length = 1127
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 226 RPASKASELSCSYSSDTKCTHSGKSSTVALFLPKSKIR 113
R +S+ S+ SC+ S + SGK + LF KS+ R
Sbjct: 983 RKSSRTSQRSCASSMSSSSAESGKLEQLNLFDGKSRKR 1020
>SB_49549| Best HMM Match : RVT_1 (HMM E-Value=3.6e-11)
Length = 520
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/38 (26%), Positives = 25/38 (65%)
Frame = +3
Query: 246 LVKTAERISSISA*DFTLSTLSASIKCYHALELIGSRL 359
L+ + ++ +++ D T+ST + ++C + ++L+G RL
Sbjct: 466 LICSKPKLRTLTGKDLTVSTENGQLECVNEVKLLGIRL 503
>SB_24238| Best HMM Match : RecR (HMM E-Value=3.7)
Length = 153
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 198 AVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQVHP 91
A+ TP+ R E+RQR+ ++ RR S D ++P
Sbjct: 102 AIFTLATPNRRPTETRQRAANTPSARRPSSPDVINP 137
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 195 QLSSEALEAGRICCNKYLVKTAERIS 272
+L S A E+ + N YLVK ER+S
Sbjct: 64 ELKSRAFESSSVFYNPYLVKEKERLS 89
>SB_45389| Best HMM Match : Peptidase_M13 (HMM E-Value=4.1e-09)
Length = 177
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +2
Query: 278 IRMRLHPFHVIRINKMLS 331
+RM +HP H IRIN ++S
Sbjct: 134 VRMSVHPLHPIRINGVVS 151
>SB_41260| Best HMM Match : DUF1081 (HMM E-Value=1.4)
Length = 617
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 207 LSSAVHIRRTP--SARTVESRQRSLSSYPNRRYGSWDQVHPDRTSISDT 67
LS ++I P S SR +S P R + +HPD S SDT
Sbjct: 140 LSDTLNISHQPIASLSVCSSRILCISPVPGARLIGLETIHPDADSKSDT 188
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,420,218
Number of Sequences: 59808
Number of extensions: 377933
Number of successful extensions: 1157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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