Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0630.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont...   138   3e-33
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi...   138   3e-33
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near...   137   3e-33
At5g48310.1 68418.m05968 expressed protein                             31   0.57 
At4g24120.1 68417.m03462 transporter, putative similar to iron-p...    29   2.3  
At5g24280.1 68418.m02856 expressed protein ; expression supporte...    28   3.0  
At1g53180.1 68414.m06027 expressed protein                             27   7.0  
At1g19510.1 68414.m02430 myb family transcription factor contain...    27   9.3  

>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
           contains Pfam profile: PF00826: Ribosomal L10
          Length = 221

 Score =  138 bits (333), Expect = 3e-33
 Identities = 61/80 (76%), Positives = 68/80 (85%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTA 260
           SSEALEA RI CNKY+VK+A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  122 bits (294), Expect = 1e-28
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT  RV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALXLAKFKFP 499
           VR  D       EAL  AKFKFP
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFP 160


>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
           Wilm's tumor suppressor protein-related similar to tumor
           suppressor GI:575354 from [Oryza sativa]
          Length = 220

 Score =  138 bits (333), Expect = 3e-33
 Identities = 61/80 (76%), Positives = 68/80 (85%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTA 260
           SSEALEA RI CNKY+VK+A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  121 bits (291), Expect = 3e-28
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT  RV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALXLAKFKFP 499
           VR  D       EAL  AKFKFP
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFP 160


>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
           identical to ribosomal protein L10.e, Wilm's tumor
           suppressor homologue, gi|17682 (Z15157), however
           differences in sequence indicate this is a different
           member of the L10 family
          Length = 221

 Score =  137 bits (332), Expect = 3e-33
 Identities = 61/80 (76%), Positives = 68/80 (85%)
 Frame = +3

Query: 21  MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 200
           MGRRPARCYR  K KPYPKSR+CRGVPDPKIRI+D+G KR  VD+FP CVHLVS E E +
Sbjct: 1   MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60

Query: 201 SSEALEAGRICCNKYLVKTA 260
           SSEALEA RI CNKY+VK+A
Sbjct: 61  SSEALEAARIACNKYMVKSA 80



 Score =  121 bits (291), Expect = 3e-28
 Identities = 57/83 (68%), Positives = 63/83 (75%)
 Frame = +2

Query: 251 KDCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVXRVRIGQXIMS 430
           K  GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK  GT  RV IGQ ++S
Sbjct: 78  KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137

Query: 431 VRSSDRWKAQVIEALXLAKFKFP 499
           VR  D       EAL  AKFKFP
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFP 160


>At5g48310.1 68418.m05968 expressed protein
          Length = 1156

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 197 LFIFVGHQVHAQWKVVNGRSLLTQIEDTDLGIRYTPTEPRFRIR-FIFAVPVASCWPAPH 21
           LF+ + +++ A  K+ N   L + I+  +L      T+   R+R F+ AVP  SC P PH
Sbjct: 736 LFLIISNEIEADIKITNEHVLPSSIDLANLAAVVYSTQLCHRLRAFLSAVP-PSC-PLPH 793


>At4g24120.1 68417.m03462 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 665

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +3

Query: 246 LVKTAERISSISA*DF-TLSTLSASIKCYHALELIGSRLGCVVRLASLRVLXHVFALDXP 422
           L+K+   +S I   DF T      S K   A ++IG+ +GC+V   S  +    F +  P
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527

Query: 423 S 425
           +
Sbjct: 528 N 528


>At5g24280.1 68418.m02856 expressed protein ; expression supported by
            MPSS
          Length = 1634

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 180  SDEYEQLSSEALEAGRICCNKYLV 251
            SDEY +  SEA   GR   N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454


>At1g53180.1 68414.m06027 expressed protein
          Length = 358

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 30  RPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 134
           R +R  RYC + PYP S      P+ K+   D+GK
Sbjct: 27  RRSRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60


>At1g19510.1 68414.m02430 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 100

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 96  VPDPKIRIFDLGKKRATVDDFPL 164
           VP PK +  D+G K   +DDF L
Sbjct: 69  VPLPKYKTVDVGSKSRGIDDFDL 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,905,434
Number of Sequences: 28952
Number of extensions: 257190
Number of successful extensions: 759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)