Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0629.Seq
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   1.2  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    26   2.1  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   2.1  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    26   2.1  
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    25   3.6  
SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|...    25   3.6  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   3.6  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    24   8.4  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    24   8.4  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   8.4  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    24   8.4  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    24   8.4  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    24   8.4  

>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +2

Query: 227 RDRNQ*IIRTKTGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKN-RSXNSGS 403
           RDR          +RD  +SG    RE S   +K    + +    S  RD   +S +SG 
Sbjct: 16  RDRRSRFTEDSYSRRDSQRSGNEAPRE-SRYYRKEEHLQERSRSRSPARDSRWKSSSSGF 74

Query: 404 EP 409
            P
Sbjct: 75  AP 76


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 266 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNR 385
           KR+  K    +ER+K E  +K +E E K  +     D+ +
Sbjct: 647 KREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREK 686


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +2

Query: 257 KTGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSEPHE 415
           K  K+   K   + E E SES+    E  + E+ESS+   ++ S  S S   E
Sbjct: 72  KKQKKSKKKEESSSESE-SESSSSESESSSSESESSSSESESSSSESSSSESE 123


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/40 (25%), Positives = 24/40 (60%)
 Frame = +2

Query: 266 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNR 385
           +RD ++  + +E  +S+  ++ R+  N++  S T R+K +
Sbjct: 69  ERDSTQRTLQIESLESKIGEQERDLNNEKLASETLREKTQ 108


>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 240 WFLSRNIYRQYPFLYFC 190
           W  S+ +YR+Y  LYFC
Sbjct: 53  WENSKLVYRRYAGLYFC 69


>SPBC409.17c |||DUF1769 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 222

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
 Frame = -3

Query: 288 PLFEPSRLPVFVLMIYWFLS-RNIYRQYPFLYFCHYR 181
           P F PS L + +       S +N Y   P  YFC  R
Sbjct: 174 PFFNPSTLSISIPYTKMSFSIKNYYNGQPLRYFCKTR 210


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 287 GVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSEP 409
           G TV+ E+         F +    SST R      +SGS+P
Sbjct: 85  GKTVKSERDSDGSGQISFTDLTTNSSTTRSSISELHSGSQP 125


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 314 ESNKKSREFENKEAESSTYRDKNRSXNSGSEP 409
           E NKK+ E  N  ++ S Y  K R      EP
Sbjct: 821 EENKKTEEVTNLHSQMSRYVTKVRQALEQGEP 852


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 216 DKYSETGTNKSSERRQASVMARRAASQSKGKNPNPT 323
           DK++     KS+  R  S+M   A   SKG  P  T
Sbjct: 633 DKFAYRNPKKSAAARGHSIMQPLAGGLSKGYVPGST 668


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +2

Query: 269  RDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSE 406
            R  + +   V RE+S         +NK  E +  +DKN+  +   E
Sbjct: 1484 RVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDISGE 1529


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -1

Query: 401 SHCSXTDSYPYRSKIQLLYFQIHDFSCW 318
           ++C     Y Y+++++ L F+I +   W
Sbjct: 85  TYCFGCQDYVYQTELETLRFKIKNIKAW 112


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 257 KTGKRDGSKSGVTVEREKSESNKKSREFENKEAESS 364
           +TG+   S +    ER ++ES+     F   E+ESS
Sbjct: 35  ETGQISDSLTKAVEERAETESSSNLSNFTTSESESS 70


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 184 IVTKIEERILTINIPRQEPI 243
           I+     RILT NIP  EPI
Sbjct: 225 IICNALSRILTSNIPTSEPI 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,105,865
Number of Sequences: 5004
Number of extensions: 16519
Number of successful extensions: 98
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)