Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0629.Seq
(419 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 31 0.50
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 31 0.50
06_01_0309 - 2233573-2234556,2234670-2234721,2235406-2236391,223... 30 0.87
03_06_0670 + 35434203-35434355,35436601-35436729,35436978-354384... 29 1.1
01_05_0577 - 23383987-23384097,23384120-23384188,23384217-233843... 29 2.0
03_06_0449 - 34013973-34014056,34014595-34014630,34014729-340148... 28 3.5
05_03_0087 + 8286700-8288088 27 4.6
10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 27 6.1
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 27 6.1
01_07_0038 - 40661252-40661460,40661743-40661824,40661882-406619... 27 6.1
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159... 27 6.1
12_01_0611 - 5034481-5034709,5034863-5035020,5035231-5035475,503... 27 8.1
06_01_1009 - 7859357-7859405,7860476-7860660,7860747-7860821,786... 27 8.1
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774... 27 8.1
05_02_0135 - 6965294-6965875 27 8.1
02_05_0201 + 26687369-26689228 27 8.1
02_05_0036 - 25292150-25293124,25294021-25294206,25294704-252948... 27 8.1
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 27 8.1
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 30.7 bits (66), Expect = 0.50
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 266 KRDGSKSGVTVEREKSES-NKKSREFENKEAESSTYRDKNRSXNSGSEPH 412
+R G G ER+ E +K+SR EN++ + RD++R + + H
Sbjct: 37 RRSGGGGGGDEERDDGERRSKRSRSEENRDRDKDKDRDRHRDRDKDRDRH 86
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 30.7 bits (66), Expect = 0.50
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 227 RDRNQ*IIRTK-TGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGS 403
RDR++ R + +RD + ++EKS KS+E E E YRDK+R + G
Sbjct: 73 RDRDRGKDRDRGEAERDKERERKDRDKEKSRGRDKSKE----EREDKDYRDKSRGKDRGD 128
Query: 404 E 406
+
Sbjct: 129 D 129
>06_01_0309 -
2233573-2234556,2234670-2234721,2235406-2236391,
2237790-2238050
Length = 760
Score = 29.9 bits (64), Expect = 0.87
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 KTGKRDGSKSGVTVEREKSESNKKSRE-FENKEAESSTYRDKNRSXNSGSEPH 412
K + + +++ VE EKS S S++ FE++ A+ DK N EPH
Sbjct: 243 KDKEMEAAQTSKNVEVEKSSSFHASKDMFESRHAKVYPKMDKTGIINDSDEPH 295
>03_06_0670 +
35434203-35434355,35436601-35436729,35436978-35438409,
35438524-35439014
Length = 734
Score = 29.5 bits (63), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 257 KTGKRDGSKSGVTVEREKSES-NKKSREFENKEAESSTYRDKNRSXNSGSEPH 412
K +R K ER K + +KK R+ ++K+ + +DK+R G+E H
Sbjct: 107 KDKERKEGKDKKDKERSKDKHRDKKDRKEKHKDKKKDKSKDKSRELEEGTERH 159
>01_05_0577 -
23383987-23384097,23384120-23384188,23384217-23384372,
23384381-23384539
Length = 164
Score = 28.7 bits (61), Expect = 2.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 296 VEREKSESNKKSREFENKEAESSTY-RDKNRSXNSGSEPHE 415
+ R + N +R N+EA+ S + R + R N GS+PHE
Sbjct: 1 MRRSRHGVNTNTRS-SNEEAQCSKHQRQRQRMCNRGSQPHE 40
>03_06_0449 -
34013973-34014056,34014595-34014630,34014729-34014816,
34015034-34015143,34015611-34015715,34015812-34015903,
34016145-34016232,34016407-34016526,34016603-34016721,
34017253-34018126
Length = 571
Score = 27.9 bits (59), Expect = 3.5
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 257 KTGKRDGSKS-GV-TVEREKSESNKKSREFENKEAESSTYRDKN 382
K+GKR+G+K+ G T R KSE ++ +E + + D N
Sbjct: 33 KSGKREGAKTKGTRTTGRNKSEKREEHKEARGNAGQRRRWSDTN 76
>05_03_0087 + 8286700-8288088
Length = 462
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = +2
Query: 281 KSGVTVEREKSES---NKKSREFENKEAESSTYRDKNRSXNSGSEPH 412
KS T +R+K S NKK+ E + K+ E Y D N + +EP+
Sbjct: 262 KSAATSKRKKKSSKPKNKKNGESKEKKDEHKEYND-NGTNKPNNEPN 307
>10_08_0154 +
15266430-15266953,15267748-15267820,15267893-15267949,
15268248-15268303,15269584-15269797,15270497-15270538,
15270661-15270735,15270820-15270903,15271880-15271944,
15272436-15272655,15272820-15272908,15273326-15273440,
15273519-15273554
Length = 549
Score = 27.1 bits (57), Expect = 6.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 257 KTGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNS 397
K +R G E+++ + +K R +KEAE RD++R +S
Sbjct: 79 KEKERSSRSRGKDAEKDRGKDGEKDR---SKEAEKDRSRDRDRDRDS 122
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 27.1 bits (57), Expect = 6.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 177 SDDSDKNRGKDTDDKYSETGTNKSSERRQASVM 275
S SDK+R ++ DK S+ +N SER M
Sbjct: 428 SSASDKHRHREIKDKTSKYSSNMESERESHKYM 460
>01_07_0038 -
40661252-40661460,40661743-40661824,40661882-40661904,
40662461-40662536,40662590-40662658,40664047-40664181
Length = 197
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 263 GKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGS 403
GK++ + G V +K K + ENK+ ++ + K+ S ++ S
Sbjct: 138 GKKEVTVRGTMVHTKKKRKQHKKKHEENKKGIAANWEKKSSSQSNDS 184
>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
25416016-25416081,25416170-25416240,25416375-25416450,
25416567-25420098,25421464-25421834
Length = 1524
Score = 27.1 bits (57), Expect = 6.1
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +2
Query: 272 DGSKSGVTVEREKSESNKKSREF--ENKEAESSTYRDKNRSXNSGSEPHE 415
D K +EREK ++ ++SR E KE E +D+ + E HE
Sbjct: 1153 DEDKEIYKMEREKEQAKERSRRELEEEKERERERAKDRLAVQRATKEAHE 1202
>12_01_0611 -
5034481-5034709,5034863-5035020,5035231-5035475,
5036686-5036983,5037644-5038482,5039763-5039823
Length = 609
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 171 TGSDDSDKNRGKDTDDKYSETGTNKSSERRQ 263
T DD+D + D D Y + KS E R+
Sbjct: 148 TSDDDNDDDMSDDLSDDYDSDASEKSFETRK 178
>06_01_1009 -
7859357-7859405,7860476-7860660,7860747-7860821,
7860852-7861313,7861411-7861482,7861629-7861775,
7861888-7862043,7862136-7862306,7862505-7862675,
7862763-7862828,7864302-7864387,7864505-7864667
Length = 600
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 192 KNRGKDTDDKYSETGTNKSSERRQASVMARRAASQSKGKN 311
+N +TD+ ET NKS+E ++ V++ R A K ++
Sbjct: 477 ENTNSNTDESNKETANNKSAEMKE--VISLRKACHEKDQS 514
>06_01_0996 +
7746358-7746493,7747102-7747262,7747586-7747647,
7748142-7748595,7748994-7749134,7749444-7749633,
7749842-7750530,7750605-7750804,7751210-7751375,
7751850-7752046,7752162-7752396
Length = 876
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 174 GSDDSDKNRGKDTDDKYSETGTNKSSERRQAS 269
G +D D++R ++ DD +ETG +S E+ A+
Sbjct: 427 GEEDDDEDRSENDDDDGAETG--RSGEQADAA 456
>05_02_0135 - 6965294-6965875
Length = 193
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +3
Query: 174 GSD---DSDKNRGKDTDDKYSETGTNKSSERRQASVMA-RRAASQSKGKNPNP 320
GSD DSD N D DD + N E + M+ ++ S S G+ P
Sbjct: 136 GSDSDHDSDSNHDIDGDDNDDDDDDNNDDEHKTNKTMSKKKKRSASGGRRVGP 188
>02_05_0201 + 26687369-26689228
Length = 619
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 174 GSDDSDKNRGKDTDD-KYSETGTNKSSERRQASVMARRAASQSKGKNPNPT 323
G D++D ++ DD + G +K R+A VMA S S+ + P P+
Sbjct: 160 GGDENDGEEEEEGDDLTLAAGGWSKGKRSRRAKVMAVGTGSVSELQLPAPS 210
>02_05_0036 -
25292150-25293124,25294021-25294206,25294704-25294874,
25295135-25295353,25295461-25295712,25295802-25295903,
25296487-25296684,25296762-25297046,25297640-25297709,
25297797-25297970,25298825-25298952,25299059-25299163,
25299686-25300030,25300361-25300563,25300964-25301045,
25301667-25301744
Length = 1190
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 177 SDDSDKNRGKDTD-DKYSETGTNKSSERRQASVMARRAAS 293
S++ DK++GK D +K E ++ +ER + + A AS
Sbjct: 430 SEEKDKDKGKGVDKEKSKEKDFDRKTEREKEKIRAVDGAS 469
>02_03_0026 -
14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 281 KSGVTVEREKSESNKKSREF-ENKEAES 361
+S ++ +K E N+K RE+ E K+AES
Sbjct: 65 RSAISSTEKKEERNRKQREYRERKKAES 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,864,654
Number of Sequences: 37544
Number of extensions: 101626
Number of successful extensions: 483
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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