Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0629.Seq
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical pr... 35 0.027
U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical p... 33 0.11
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 31 0.44
Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical pr... 29 1.0
AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical ... 29 1.0
AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical ... 29 1.4
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 29 1.8
AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical... 29 1.8
Z81531-4|CAB04318.1| 285|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 28 3.1
AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical ... 28 3.1
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 28 3.1
U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical pr... 27 4.1
AF016419-7|AAG24050.1| 317|Caenorhabditis elegans Hypothetical ... 27 4.1
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 27 5.5
AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical ... 27 5.5
AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical ... 27 5.5
U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical p... 27 7.2
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 27 7.2
AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical ... 27 7.2
Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical pr... 26 9.5
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr... 26 9.5
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ... 26 9.5
>U49945-4|AAC47924.1| 535|Caenorhabditis elegans Hypothetical
protein C02H7.1 protein.
Length = 535
Score = 34.7 bits (76), Expect = 0.027
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 260 TGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSE 406
T K+ SK E+EKSE KKS E + K+ +SS+ +++++S + SE
Sbjct: 141 TTKKRSSKKETHEEKEKSE-KKKSAEEKEKKKKSSSSKERHKSSDRSSE 188
>U53154-10|AAC25849.1| 142|Caenorhabditis elegans Hypothetical
protein C33G8.3 protein.
Length = 142
Score = 32.7 bits (71), Expect = 0.11
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 251 RTKTGKRDGSKSGVTVEREKSESNKKSREFENK--EAESSTYRDKNRSXNSGSEPHE 415
R K K+ G+K E E+ + KK + +NK E E +DK + +S E E
Sbjct: 75 REKKNKKKGNKKDEDEEEEEDKDKKKKDKKKNKDSEEEEDKKKDKKKKNDSSDESEE 131
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 266 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXN 394
K+D K+ + E E + +KK + + E+E + KN+ N
Sbjct: 100 KKDKKKNKDSEEEEDKKKDKKKKNDSSDESEEENKKRKNKRKN 142
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/62 (29%), Positives = 34/62 (54%)
Frame = +2
Query: 227 RDRNQ*IIRTKTGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSE 406
RDR++ R++ RD S+ + ERE++ S +S + ++ S R ++RS + +
Sbjct: 121 RDRSR--DRSRDRSRDRSRER-SRERERTRSRSRSPQERDRSHSKSRSRSRSRSRSRSAS 177
Query: 407 PH 412
PH
Sbjct: 178 PH 179
>Z83244-6|CAD18877.1| 502|Caenorhabditis elegans Hypothetical
protein W06F12.2c protein.
Length = 502
Score = 29.5 bits (63), Expect = 1.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +3
Query: 180 DDSDKNRGKDTDDKYSETGTNKSSERRQASVMARRAASQSKGKNP 314
+D D+NR ++ +++ E N+ R + S RR S NP
Sbjct: 434 NDRDRNREREREERERENRDNERGRRERESEAPRRRKETSTTSNP 478
>AL023828-7|CAA19452.1| 881|Caenorhabditis elegans Hypothetical
protein Y17G7B.5a protein.
Length = 881
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 180 DDSDKNRGKDTD-DKYSETGTNKSSERRQASVMARRAASQ 296
DD +++ + + D+YSE+G + +S+ SV ARRAA +
Sbjct: 51 DDMERDYREQPELDQYSESGMDDASDVGSLSVSARRAAER 90
>AC024824-1|AAK85503.1| 679|Caenorhabditis elegans Hypothetical
protein Y55B1BR.3 protein.
Length = 679
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Frame = +2
Query: 251 RTKTGKRDGSK---SGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSEPHE 415
+ K KRD S S + R+KS+ +KKS++F+ E D + E E
Sbjct: 238 KAKRSKRDDSSDDDSEMERRRKKSKKSKKSKKFKKSEKRKRAVNDSSSDDEDEEEKPE 295
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +2
Query: 266 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSEPHE 415
K+D K E+EK+E KK E + E + +++ N E E
Sbjct: 61 KKDEEKDKEEAEKEKNEKEKKEEEKKEDGHEKKEDKKEDKKENENDEKKE 110
>AC024843-12|AAF60833.3| 986|Caenorhabditis elegans Hypothetical
protein Y61A9LA.10 protein.
Length = 986
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Frame = +3
Query: 174 GSDDSDKNRGKDTDDKY-----SETGTNKSSERRQASVMARRAASQSKGK 308
GSD+ D + G+D DD+ ETG N+ E +A ++ ++K K
Sbjct: 488 GSDNEDNDDGEDMDDEEEDGDDDETGGNEKKEESEADKSRKQKRLEAKIK 537
>Z81531-4|CAB04318.1| 285|Caenorhabditis elegans Hypothetical
protein F36D3.4 protein.
Length = 285
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 257 KTGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRS 388
K+GK KS + + KSE K RE ++K ++S + ++S
Sbjct: 66 KSGKPSHGKSSKSKKSSKSEKKKLRRESKDKSSKSKRSKRSSKS 109
>Z72517-2|CAA96694.1| 490|Caenorhabditis elegans Hypothetical
protein T28F4.3 protein.
Length = 490
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 177 SDDSDKNRGKDTDDKYSETGTNKSSERRQASVMARRAASQSKGKNPNPT 323
++D KNR K K + K S+ +A AR+ A++ K P+ T
Sbjct: 439 AEDKSKNRQKSVYVKMPLSSKEKGSKHERAKQGARKNAARKAKKKPSVT 487
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 386 TDSYPYRSKIQLLYFQIHDFSCW--IRIFPF 300
TD++ + I+LLY I+ FSC +R FPF
Sbjct: 135 TDTHRRAALIELLYPTIYKFSCLLDLRFFPF 165
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 386 TDSYPYRSKIQLLYFQIHDFSCW--IRIFPF 300
TD++ + I+LLY I+ FSC +R FPF
Sbjct: 135 TDTHRRAALIELLYPTIYKFSCLLDLRFFPF 165
>AL031629-3|CAA20976.1| 555|Caenorhabditis elegans Hypothetical
protein Y106G6D.3 protein.
Length = 555
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 227 RDRNQ*IIRTKTG-KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGS 403
++R++ I R+K KRD + + +KS S + + +++ +DKN +S
Sbjct: 99 KERSKRIARSKKSIKRDRERDSDSSRIKKSGSKRNLEKSNRDDSKRKISKDKNSRRSSQE 158
Query: 404 EPHEF 418
+ H++
Sbjct: 159 KSHKY 163
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 386 TDSYPYRSKIQLLYFQIHDFSCW--IRIFPF 300
TD++ + I+LLY I+ FSC +R FPF
Sbjct: 135 TDTHRRAALIELLYPTIYKFSCLLDLRFFPF 165
>U40952-2|AAA81737.1| 818|Caenorhabditis elegans Hypothetical
protein C03B1.7 protein.
Length = 818
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 266 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKN 382
K++ SK V + EK++ + + NK AES T DKN
Sbjct: 321 KKEQSKLFVEKDLEKNKESSSASLSTNKLAESPTEADKN 359
>AF016419-7|AAG24050.1| 317|Caenorhabditis elegans Hypothetical
protein F07G11.1 protein.
Length = 317
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 285 LFEPSRLPVFVLMIYWFLSRNIYRQYPFLYFCHYRRCQFP 166
LF + L VF+ ++Y+F+ N + L F +R C FP
Sbjct: 35 LFSYALLVVFIFLVYYFMQPNSNK----LIFKAFRDCVFP 70
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 272 DGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSEPHE 415
DGSK ++ E +K+ + E+K E ++DK++ + E
Sbjct: 1224 DGSKKDKKEPHKEKEKDKEKEKEEDKGKEKEKHKDKDKDKEHKKKSRE 1271
>AL132864-1|CAB63392.1| 613|Caenorhabditis elegans Hypothetical
protein Y53H1A.1 protein.
Length = 613
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +2
Query: 278 SKSGVTVEREKSESNKK-SREFENKEAE-SSTYRDKNRSXNSGSE 406
SK+G + EKS S KK RE + E E S+ + K RS + E
Sbjct: 527 SKNGDNKKSEKSSSEKKREREMRDDEKERKSSKKSKKRSKSREKE 571
>AF067607-1|AAY86220.1| 342|Caenorhabditis elegans Hypothetical
protein C18H7.10 protein.
Length = 342
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +2
Query: 299 EREKSESNKKSREFENKEAESSTYRDKNRSXNSGSEP 409
+ +K++ NKK+ E K+ + D+ NS EP
Sbjct: 223 DNDKNDKNKKNNEDAKKKDNTQKDADEEEEDNSDDEP 259
>U53154-11|AAC25848.1| 390|Caenorhabditis elegans Hypothetical
protein C33G8.2 protein.
Length = 390
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 251 RTKTGK-RDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSEPHE 415
R K+G D S S ++ K +KK +E E+K+ E +DK + E E
Sbjct: 103 RNKSGSDSDSSDSSEDKKKRKQMRDKKKQEEEDKKKEEEE-KDKKKKDKKKEEDDE 157
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 180 DDSDKNRGKDTDDKYSETGTNKSSERRQASVMARRAASQSKGK 308
+DS+K++ + DD+ +E T+ +R S R+ S + +
Sbjct: 20 EDSEKDKKRSRDDRKTEKRTHDRDRKRNRSRSRSRSRSPKRSR 62
>AF039046-2|AAB94218.2| 516|Caenorhabditis elegans Hypothetical
protein R09B5.11 protein.
Length = 516
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 311 SESNKKSREFENKEAESSTYRDKNRSXN 394
+ NK R F N E+ESS+ +K+ N
Sbjct: 6 ASQNKNDRSFSNMESESSSNVEKSEKEN 33
>Z77136-8|CAB00885.2| 278|Caenorhabditis elegans Hypothetical
protein ZC376.8 protein.
Length = 278
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +2
Query: 251 RTKTGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSXNSGSE 406
+ + K +GSK E+EK +SNK E+K++E D + G +
Sbjct: 97 KKEKSKNEGSKKEEDKEKEKEKSNKA----EDKKSEDPKKEDAKKPDVKGKD 144
>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
ZC373.4 protein.
Length = 1211
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Frame = +2
Query: 281 KSGVTVEREKSESNKKSREFENKEAE-----SSTYRDKN 382
K+ V EKS S K+ + ENKE E SST +DK+
Sbjct: 926 KNVVKQTAEKSTSEKEHKTTENKEQERIIKKSSTLKDKD 964
>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
protein Y76B12C.2 protein.
Length = 1119
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 248 IRTKTGKRDGSKSGVTVEREKSESNKKSREFENKEAESS 364
IR KTG + K + + +SES+ +S + E++ +E+S
Sbjct: 252 IRPKTGSKIAKKREKSFKISESESSSESPDDESEASEAS 290
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,092,894
Number of Sequences: 27780
Number of extensions: 95429
Number of successful extensions: 637
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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