Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0628.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    71   9e-15
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    25   0.58 
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   1.0  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    24   1.0  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    23   2.3  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    21   5.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   5.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.4  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 70.5 bits (165), Expect = 9e-15
 Identities = 32/34 (94%), Positives = 33/34 (97%)
 Frame = +2

Query: 284 LQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPA 385
           LQDVYKIGGIGTVPVGRVETGVLKPG +VVFAPA
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGVLKPGMVVVFAPA 34



 Score = 49.2 bits (112), Expect = 2e-08
 Identities = 22/24 (91%), Positives = 22/24 (91%)
 Frame = +1

Query: 379 PRNITTEVKSVEMHHEALQEAVPG 450
           P NITTEVKSVEMHHEAL EAVPG
Sbjct: 33  PANITTEVKSVEMHHEALPEAVPG 56


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 352 QHTSFN-SADGHGTNTTDFVYVLQ 284
           ++ SFN +A+GHG NT+   Y  Q
Sbjct: 280 EYNSFNWTANGHGHNTSSHNYYAQ 303


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 236 IESFNEAFSVSFAFFTLH 183
           I++FN+ F  SF  FTL+
Sbjct: 271 IDAFNDIFGWSFLLFTLY 288


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 236 IESFNEAFSVSFAFFTLH 183
           I++FN+ F  SF  FTL+
Sbjct: 197 IDAFNDIFGWSFLLFTLY 214


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 373 LCPRNITTEVKSVEMH 420
           LCPR+I  ++K  E H
Sbjct: 22  LCPRSIDEKIKRQERH 37


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 438 FLESFVVHLHRFDFSSDV 385
           FLE  + H  RF FSS V
Sbjct: 68  FLEMTLAHHCRFKFSSSV 85


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 138 CCLRAIQKWARKRQQLGCSQSS*CMRIL 55
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 138 CCLRAIQKWARKRQQLGCSQSS*CMRIL 55
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 382 GGKDNNGTWFQHTSF 338
           GG +NNGT   H+ F
Sbjct: 187 GGNNNNGTPGGHSGF 201


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +1

Query: 343 WCVETRYHCCLCPRNITTEVKS 408
           +CV+ +Y+   CP  +    K+
Sbjct: 127 YCVDGKYNMITCPNGLVYNDKA 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,813
Number of Sequences: 336
Number of extensions: 3206
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)