Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0628.Seq
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                105   2e-23
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           34   0.067
SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)                   29   1.9  
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)             29   2.5  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)             28   4.4  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.4  
SB_5569| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)                     28   5.8  
SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  105 bits (253), Expect = 2e-23
 Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 2/100 (2%)
 Frame = +2

Query: 254 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPA--TSLLKSNLWRCTTK 427
           RP+  PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGT+V F+P+  T+ +KS +      
Sbjct: 99  RPSGLPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTVVTFSPSNITTEVKS-VEMHHES 157

Query: 428 LSKKLYLETIVGFNVKNVSRQGIASWXXAGDFKNKPT*GC 547
           L++ L  +  VGFNVKNVS + I     AGDFKN P   C
Sbjct: 158 LAEALPGDN-VGFNVKNVSVKDIKRGNVAGDFKNNPPKPC 196



 Score = 31.5 bits (68), Expect = 0.47
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +3

Query: 135 NMLEPSTKMPWFKGWQVER 191
           NM+  +++MPWFK W +ER
Sbjct: 53  NMITGTSQMPWFKQWTIER 71


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 34.3 bits (75), Expect = 0.067
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 3   DSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 92
           D     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 293 DDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +2

Query: 233 RCHPATCRPTDKPLRLPLQDVYKIGG-IGTVPVGRVETGVLKPGTIVVFAPATSLL 397
           +C    C+ T    +  + ++ K G  +GT+ +G+VE+G +  G  +V  P   L+
Sbjct: 438 KCGDVGCQITQMKRKKNMIEMGKCGDDMGTIVLGKVESGTINKGQTLVLMPNKRLI 493


>SB_30824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 272 GACQWGGRWQDGIESFNEAFSVSFAF 195
           G+  WGGR+  G +S  EAF+ S +F
Sbjct: 6   GSKLWGGRFTGGTDSVMEAFNASISF 31


>SB_51437| Best HMM Match : RWD (HMM E-Value=1.3e-05)
          Length = 359

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
 Frame = -3

Query: 453 VSRYSFLESFVVHLHRFDFSSDVAGAKTTMV---PGFNTPVSTLPTGTVPIPP----ILY 295
           V     LE  + H  R      VA          PG  TPV TL  G+ P+ P    +LY
Sbjct: 282 VPSQDMLERLIAHAERNSNLGRVADKPALYAFVSPGLRTPVITLSIGSSPLKPYSHLLLY 341

Query: 294 TSCRGRRRGLSVGRQVAGWHRE 229
             C     G  +G QV   HRE
Sbjct: 342 VIC-----GYGLGGQVL-LHRE 357


>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
          Length = 1381

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 354 FNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRQVAGWHRE 229
           FNTP +    G  P+P + Y   +G +      R+VA WHRE
Sbjct: 690 FNTPENQNYVG--PMPDLSYYDLKGMKA--EEAREVAEWHRE 727


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 123 WHGDNMLEPSTKMPWFKGWQVERKE 197
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
          Length = 177

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 263 DKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 382
           ++P    + D Y + G+GTV  G    G+++    ++  P
Sbjct: 102 EEPSEFQIDDTYSVPGVGTVISGTCMKGIIRLNDTLLLGP 141


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 6    STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 146
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_5569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 901

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 366 MVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRQVAGWHREL 226
           ++P  NTP + +PTG    P       R +R  +   RQ  G H+EL
Sbjct: 664 VIPPDNTPGALVPTGLQATPSEELIKARIKRYAID-DRQAKGSHKEL 709


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 179 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 69
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
          Length = 417

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
 Frame = -3

Query: 453 VSRYSFLESFVVHLHRFDFSSDVAGAKTTMV---PGFNTPVSTLPTGTVPIPP---ILYT 292
           V     LE  + H  R      VA          PG  TPV TL  G+ P+ P   +L+T
Sbjct: 14  VPSQDMLERLIAHAERNSNLGRVADKPALYAFVSPGLRTPVITLSIGSSPLKPYSHLLFT 73

Query: 291 S 289
           S
Sbjct: 74  S 74


>SB_14902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 441

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 320 VPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLSKKLYLETIVGFNVKN 478
           +  G  +TG  +  +I        LL+  +W C T  S+  Y++T+  F+  N
Sbjct: 322 IAYGWWKTGAQQVRSITGHTARPELLQKLIWVCVTHDSRVQYIDTLRAFHFGN 374


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,752,156
Number of Sequences: 59808
Number of extensions: 434008
Number of successful extensions: 1483
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1480
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)