Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0628.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 121 3e-28
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 121 3e-28
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 121 3e-28
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 48 6e-06
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 37 0.008
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.55
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.55
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 29 1.7
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 29 1.7
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 29 1.7
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 29 1.7
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 1.7
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 1.7
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 29 1.7
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 1.7
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 1.7
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 28 3.9
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 28 3.9
Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical pr... 27 6.7
U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type chlo... 27 8.9
AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride ... 27 8.9
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 121 bits (292), Expect = 3e-28
Identities = 54/71 (76%), Positives = 59/71 (83%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 182
DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW
Sbjct: 122 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 181
Query: 183 VERKEGKADGK 215
VERKEG A GK
Sbjct: 182 VERKEGNASGK 192
Score = 97.1 bits (231), Expect = 7e-21
Identities = 50/94 (53%), Positives = 58/94 (61%)
Frame = +2
Query: 254 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLS 433
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP + +
Sbjct: 206 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 265
Query: 434 KKLYLETIVGFNVKNVSRQGIASWXXAGDFKNKP 535
+ VGFNVKNVS + I D K P
Sbjct: 266 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDP 299
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 121 bits (292), Expect = 3e-28
Identities = 54/71 (76%), Positives = 59/71 (83%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 182
DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 215
Query: 183 VERKEGKADGK 215
VERKEG A GK
Sbjct: 216 VERKEGNASGK 226
Score = 97.1 bits (231), Expect = 7e-21
Identities = 50/94 (53%), Positives = 58/94 (61%)
Frame = +2
Query: 254 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLS 433
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP + +
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 434 KKLYLETIVGFNVKNVSRQGIASWXXAGDFKNKP 535
+ VGFNVKNVS + I D K P
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDP 333
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 121 bits (292), Expect = 3e-28
Identities = 54/71 (76%), Positives = 59/71 (83%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 182
DSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+ MPWFKGW
Sbjct: 156 DSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWA 215
Query: 183 VERKEGKADGK 215
VERKEG A GK
Sbjct: 216 VERKEGNASGK 226
Score = 97.1 bits (231), Expect = 7e-21
Identities = 50/94 (53%), Positives = 58/94 (61%)
Frame = +2
Query: 254 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLS 433
RPTD+PLRLPLQDVYKIGGIGTVPVGRVETG++KPG +V FAP + +
Sbjct: 240 RPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESL 299
Query: 434 KKLYLETIVGFNVKNVSRQGIASWXXAGDFKNKP 535
+ VGFNVKNVS + I D K P
Sbjct: 300 PEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDP 333
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 47.6 bits (108), Expect = 6e-06
Identities = 28/69 (40%), Positives = 34/69 (49%)
Frame = +1
Query: 43 KSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENAS 222
+S + P +SRR T Q L D TETTC C GSRDG + +K L E S
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 223 LKLSMPSCH 249
+L PS H
Sbjct: 212 SRLLTPSSH 220
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +3
Query: 21 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 176
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 323 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 372
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 PTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAPATS 391
P+D PLR+ + DV K+ V G++E+G V K + + + T+
Sbjct: 388 PSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTA 433
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 37.5 bits (83), Expect = 0.006
Identities = 17/53 (32%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Frame = +3
Query: 21 YSEPRFEEIKKEVSSYI-KKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 176
+S+ RF+EIK +S ++ ++ G++ FVP+SG+ G+N+++ ++ W+ G
Sbjct: 341 WSQDRFDEIKNNLSVFLTRQAGFSKPK--FVPVSGFTGENLIK-RMELDWYDG 390
Score = 31.1 bits (67), Expect = 0.55
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 257 PTDKPLRLPLQDVYKIGGIGTVPVGRVETG-VLKPGTIVVFAPATS 391
P+D PLR+ + DV K+ V G++E+G V K + + + T+
Sbjct: 406 PSDGPLRIGISDVLKVASNQLVVSGKIESGEVEKDDKVYIMSSVTA 451
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 37.1 bits (82), Expect = 0.008
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPST--KMPWFK 173
D + E RF+EI+ +++ +++K+G+NP + +VP SG G + + T + W+
Sbjct: 258 DDPTVKWEEERFKEIEGKLTPFLRKLGFNPKTDITYVPCSGLTGAFIKDRPTGSEGNWYS 317
Query: 174 G 176
G
Sbjct: 318 G 318
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +2
Query: 242 PATCRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAP 382
P+ R + P+R + + Y +GTV +G++E+G ++ G +V P
Sbjct: 330 PSYKRDFNGPVRCTVAEKYS--EMGTVIIGKMESGCVQKGDTLVVMP 374
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 269 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATS 391
P + D+Y + G+GT+ G + +G ++ I++ P ++
Sbjct: 373 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 413
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.55
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +2
Query: 269 PLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATS 391
P + D+Y + G+GT+ G + +G ++ I++ P ++
Sbjct: 372 PAHFQIDDIYWVDGVGTIASGTLLSGTIRLNDILLLGPTSN 412
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 372 SLPPQHHY*SQICGDAPRSS 431
SLPPQHH+ S + D+P +S
Sbjct: 2019 SLPPQHHHVSPLSNDSPSNS 2038
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +3
Query: 372 SLPPQHHY*SQICGDAPRSS 431
SLPPQHH+ S + D+P +S
Sbjct: 2022 SLPPQHHHVSPLSNDSPSNS 2041
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 287 QDVYKIGGIGTVPVGRVETGVLKPG 361
+ VY I G GTV G++E G+LK G
Sbjct: 257 EHVYSIVGRGTVITGKLERGILKRG 281
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 287 QDVYKIGGIGTVPVGRVETGVLKPG 361
+ VY I G GTV G++E G+LK G
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRG 282
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 61 PHTSRRLATTQLLSLSCPFLD 123
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 61 PHTSRRLATTQLLSLSCPFLD 123
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +2
Query: 287 QDVYKIGGIGTVPVGRVETGVLKPG 361
+ VY I G GTV G++E G+LK G
Sbjct: 258 EHVYSIVGRGTVITGKLERGILKRG 282
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 61 PHTSRRLATTQLLSLSCPFLD 123
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 1.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 61 PHTSRRLATTQLLSLSCPFLD 123
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 278 LPLQDVYKIGGIGTVPVGRVETGVLKPG 361
+P+ I G GTV VG +E GVLK G
Sbjct: 242 MPIASKTAITGRGTVIVGTLERGVLKKG 269
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 278 LPLQDVYKIGGIGTVPVGRVETGVLKPG 361
+P+ I G GTV VG +E GVLK G
Sbjct: 242 MPIASKTAITGRGTVIVGTLERGVLKKG 269
>Z70205-2|CAA94116.1| 529|Caenorhabditis elegans Hypothetical
protein C11H1.3 protein.
Length = 529
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 369 TMVPGFNTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRQVAGWHREL 226
++V G N + +PT T P+ P + +S R +R S H+ L
Sbjct: 332 SLVEGLNGSPTPIPTVTDPVNPTVNSSTRRKRHSSSKSSNGKSMHQVL 379
>U28943-17|AAK68292.2| 811|Caenorhabditis elegans Clc-type
chloride channel protein3, isoform b protein.
Length = 811
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 278 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLSKKLYLETI 457
LP+ + K GIGT + ++E G + P T +S+ W C+ + S K + T+
Sbjct: 63 LPIDEDSKSMGIGTKILSKIEKNKTSDGLTIPLTPTTQ-KQSSSW-CSFE-SIKTFFRTV 119
Query: 458 V 460
+
Sbjct: 120 I 120
>AF173172-1|AAF13165.1| 811|Caenorhabditis elegans CLC chloride
channel protein protein.
Length = 811
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 278 LPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLSKKLYLETI 457
LP+ + K GIGT + ++E G + P T +S+ W C+ + S K + T+
Sbjct: 63 LPIDEDSKSMGIGTKILSKIEKNKTSDGLTIPLTPTTQ-KQSSSW-CSFE-SIKTFFRTV 119
Query: 458 V 460
+
Sbjct: 120 I 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,366,529
Number of Sequences: 27780
Number of extensions: 316295
Number of successful extensions: 931
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -