Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0628.Seq
(548 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor 1-a... 151 6e-39
AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor 1-a... 151 6e-39
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 151 6e-39
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 139 1e-35
EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor 1-a... 41 1e-05
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 24 1.2
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 23 2.0
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 21 6.2
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 21 6.2
>EF013389-1|ABK54743.1| 172|Apis mellifera elongation factor
1-alpha protein.
Length = 172
Score = 151 bits (365), Expect = 6e-39
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 182
DSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW
Sbjct: 83 DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWT 142
Query: 183 VERKEGKADGKC 218
VERKEGK +GKC
Sbjct: 143 VERKEGKVEGKC 154
>AY208278-1|AAO48970.1| 274|Apis mellifera elongation factor
1-alpha protein.
Length = 274
Score = 151 bits (365), Expect = 6e-39
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 182
DSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW
Sbjct: 99 DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWT 158
Query: 183 VERKEGKADGKC 218
VERKEGK +GKC
Sbjct: 159 VERKEGKVEGKC 170
Score = 101 bits (242), Expect = 5e-24
Identities = 54/92 (58%), Positives = 61/92 (66%)
Frame = +2
Query: 254 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLS 433
RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA + +
Sbjct: 183 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEAL 242
Query: 434 KKLYLETIVGFNVKNVSRQGIASWXXAGDFKN 529
++ VGFNVKNVS + + AGD KN
Sbjct: 243 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 151 bits (365), Expect = 6e-39
Identities = 66/72 (91%), Positives = 68/72 (94%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 182
DSTEPPYSE RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLE S+KMPWFKGW
Sbjct: 156 DSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMPWFKGWT 215
Query: 183 VERKEGKADGKC 218
VERKEGK +GKC
Sbjct: 216 VERKEGKVEGKC 227
Score = 104 bits (250), Expect = 5e-25
Identities = 56/97 (57%), Positives = 63/97 (64%)
Frame = +2
Query: 254 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLS 433
RPTDK LRLPLQDVYKIGGIGTVPVGRVETGVLKPG +V FAPA + +
Sbjct: 240 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEAL 299
Query: 434 KKLYLETIVGFNVKNVSRQGIASWXXAGDFKNKPT*G 544
++ VGFNVKNVS + + AGD KN P G
Sbjct: 300 QEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKG 336
Score = 31.5 bits (68), Expect = 0.006
Identities = 15/21 (71%), Positives = 15/21 (71%)
Frame = +3
Query: 486 VKELRRG*XLVTSKTNPPKGA 548
VKELRRG SK NPPKGA
Sbjct: 317 VKELRRGYVAGDSKNNPPKGA 337
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 139 bits (337), Expect = 1e-35
Identities = 60/71 (84%), Positives = 65/71 (91%)
Frame = +3
Query: 3 DSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQ 182
D T+PPYSE RFEEIKKEVSSYIKKIGYN A+VAFVPISGWHGDNMLEPS K PW+KGW+
Sbjct: 156 DMTDPPYSEARFEEIKKEVSSYIKKIGYNTASVAFVPISGWHGDNMLEPSPKTPWYKGWK 215
Query: 183 VERKEGKADGK 215
VERK+G ADGK
Sbjct: 216 VERKDGNADGK 226
Score = 103 bits (248), Expect = 9e-25
Identities = 54/97 (55%), Positives = 63/97 (64%)
Frame = +2
Query: 254 RPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPATSLLKSNLWRCTTKLS 433
RPTDK LRLPLQDVYKIGGIGTVPVGRVETG+LKPG +V FAPA + +
Sbjct: 240 RPTDKALRLPLQDVYKIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEAL 299
Query: 434 KKLYLETIVGFNVKNVSRQGIASWXXAGDFKNKPT*G 544
+ VGFNVKN+S + + AGD KN+P G
Sbjct: 300 TEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRG 336
Score = 27.9 bits (59), Expect = 0.072
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 486 VKELRRG*XLVTSKTNPPKGA 548
VKELRRG SK PP+GA
Sbjct: 317 VKELRRGYVAGDSKNQPPRGA 337
>EF013227-1|ABK54581.1| 119|Apis mellifera elongation factor
1-alpha protein.
Length = 119
Score = 40.7 bits (91), Expect = 1e-05
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +1
Query: 403 KSVEMHHEALQEAVPGDNCRFQRK 474
KSVEMHHEAL EA+PGDN F K
Sbjct: 1 KSVEMHHEALTEALPGDNVGFNVK 24
Score = 32.3 bits (70), Expect = 0.003
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 458 VGFNVKNVSRQGIASWXXAGDFKNKPT*G 544
VGFNVKN+S + + AGD KN+P G
Sbjct: 19 VGFNVKNISVKELRRGYVAGDSKNQPPRG 47
Score = 27.9 bits (59), Expect = 0.072
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 486 VKELRRG*XLVTSKTNPPKGA 548
VKELRRG SK PP+GA
Sbjct: 28 VKELRRGYVAGDSKNQPPRGA 48
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 23.8 bits (49), Expect = 1.2
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 459 TIVSRYSFLESFVVHLHRFDFSSDVA---GAKTTMVPGFNTPVST 334
T S Y ++ + H H + A GA ++MVPGF + ++
Sbjct: 84 TTSSMYPYVSAAAAHHHHQQQQAVAAAAFGATSSMVPGFGSTAAS 128
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 23.0 bits (47), Expect = 2.0
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 368 VVFAPATSLLKSNLWRCTTKLSKKLYLETIVGFNVKNVSRQ 490
VV T L +W+ K S L+T+V + +V Q
Sbjct: 276 VVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQ 316
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 21.4 bits (43), Expect = 6.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = -1
Query: 158 FG*RLQHVVSVPSRNGHESDSSWV 87
FG L H++ V +N + + WV
Sbjct: 35 FGLSLHHIIDVDEKNQILTTNCWV 58
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 21.4 bits (43), Expect = 6.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1
Query: 1 WIPLNHHTVSPDLRKSRRKY 60
W+P+N + S +L +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,940
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 25
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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