Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0627.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   1.3  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.8  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   2.3  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   2.3  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   2.3  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   3.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.1  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   4.0  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    20   9.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         20   9.4  

>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 223 GTRREEHHLLRNRP 182
           G R+  HHL++N+P
Sbjct: 82  GVRKVLHHLIKNKP 95


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 320 PDPQIPHRTRNRH*LG*HGXDLASYLSTMSCVSPP 424
           P+      T NRH +  +G  + S +  +S ++PP
Sbjct: 503 PEDLFAPNTYNRHLVAPNGDHVISLIDEISYMAPP 537


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 223 GTRREEHHLLRNRP 182
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -2

Query: 223 GTRREEHHLLRNRP 182
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 320 PDPQIPHRTRNRH 358
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 114 KLVRCRCDKMKIKRPAVTANREKQIP 37
           K  R   D+ ++ RPA  ANR    P
Sbjct: 330 KRPRPNIDRHEVTRPAAPANRGNGFP 355


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 389 MPNLXHVIPVSDDSVFD 339
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 389 MPNLXHVIPVSDDSVFD 339
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 389 MPNLXHVIPVSDDSVFD 339
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -1

Query: 389 MPNLXHVIPVSDDSVFD 339
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 243 PPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHG 350
           PP    VG+    S++  +   K+ +    YP E+G
Sbjct: 41  PPKRAPVGLSLAASHLQQQQLKKQRLDNGDYPYENG 76


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 268 IPTITPDGGAFPR 230
           +P+I+P GG  P+
Sbjct: 201 LPSISPSGGFLPK 213


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -2

Query: 259 ITPDGGAFPRSRGTRREEHHLLRNRPCT 176
           + P G  F  ++  R+E      + PCT
Sbjct: 667 VGPSGDCFYENKFYRQEAQWTSSDNPCT 694


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 223 PSIVGRPRHQG*WSVWDR 276
           P ++G+P H+    VW++
Sbjct: 9   PEMMGKPIHEEVAQVWEQ 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,809
Number of Sequences: 336
Number of extensions: 2422
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)