Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0627.Seq
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 109 3e-25
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 59 4e-10
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 57 1e-09
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 44 1e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 40 1e-04
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 37 0.002
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 36 0.003
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.1
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 25 5.4
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 5.4
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 25 5.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 5.4
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 7.1
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 7.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 7.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 7.1
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 109 bits (261), Expect = 3e-25
Identities = 47/55 (85%), Positives = 49/55 (89%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDM KIWHHTF
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTF 90
Score = 97.1 bits (231), Expect = 1e-21
Identities = 52/105 (49%), Positives = 60/105 (57%)
Frame = +1
Query: 133 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG*WSVWDRRTLM*EMRHRAK 312
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G ++ ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 313 XXXXXXXXXXXXXXXLTGMTWXRFGIIPFYNELRVTPEEHPVXLT 447
+ FYNELRV PEEHP LT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLT 106
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 58.8 bits (136), Expect = 4e-10
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DM +IW + +
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIY 94
Score = 52.4 bits (120), Expect = 3e-08
Identities = 20/34 (58%), Positives = 27/34 (79%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 56.8 bits (131), Expect = 1e-09
Identities = 22/51 (43%), Positives = 37/51 (72%)
Frame = +3
Query: 276 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTFLQ*AACHPRG 428
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF + PRG
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRG 100
Score = 48.0 bits (109), Expect = 7e-07
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 139 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 243
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 43.6 bits (98), Expect = 1e-05
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 279 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMXKIWHHTFLQ*AACHP 422
D ++G++A K +L YPI HG + NWD M + W + + C P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEP 121
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 234
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 40.3 bits (90), Expect = 1e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 136 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 237
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 24.2 bits (50), Expect = 9.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +3
Query: 321 LTLKYPIEHGIVTNWDDMXKIWHHTFLQ*AACHPRGTP 434
+ +K I +G V NWD +W + Q +P P
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHP 100
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 136 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 237
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 246
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 29.9 bits (64), Expect = 0.19
Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 267 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMXKIWHHTFLQ 404
+ + + VG++ + G ++ + P E +++NWD M ++ +TFL+
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFLK 108
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 178 TYRSHCLLPTRQLLRRTS*ISEI 110
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 5.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Frame = +3
Query: 336 PIEHGIVTNWDDMXKIWHHTF 398
PI+ G V +W+ + W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 5.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 223 PSIVGRPRHQG*WSVWDRRTL 285
P+++ G WSVWD R+L
Sbjct: 350 PNLLATGADNGVWSVWDLRSL 370
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 222 PLDRG-KAPPSGVMVGMGQKDSYVGDEAQSKRGI 320
P+ G KA S V +G GQ++ +GD K I
Sbjct: 173 PMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAI 206
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 255 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 341
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/47 (23%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 153 QRGNFFVAHLEL-VKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPC 16
++ +F ++E V+++ CRC K P ++ + + CPC
Sbjct: 486 EKRKYFEINIETPVRILSCRCVKDSTLLPPYESSSQGDNQVLLPCPC 532
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 7.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAG 198
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 24.6 bits (51), Expect = 7.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = -1
Query: 332 FEGQDTSFALCLISYIRVLLSHTD 261
+EG+DT+ +Y+R++L TD
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTD 97
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 7.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +1
Query: 181 KAGFAGDDAP-RAVFPSIVGRPRHQG*WSVWD 273
KA F+G R+ + VG+P H G S WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,949,152
Number of Sequences: 5004
Number of extensions: 40746
Number of successful extensions: 105
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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