Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0627.Seq
(449 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 2e-25
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 2e-25
SB_56| Best HMM Match : Actin (HMM E-Value=0) 111 2e-25
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 111 2e-25
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 111 2e-25
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 100 6e-22
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 1e-09
SB_54| Best HMM Match : Actin (HMM E-Value=0) 60 1e-09
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 2e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 48 5e-06
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 2e-04
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 41 5e-04
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 33 0.14
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.19
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.33
SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9) 29 1.8
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 28 4.1
SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5) 28 4.1
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1) 27 5.4
SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1) 27 7.2
SB_30230| Best HMM Match : CH (HMM E-Value=0.0035) 27 7.2
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 27 7.2
SB_15653| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.2
SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01) 27 7.2
SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031) 27 9.5
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06) 27 9.5
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 111 bits (268), Expect = 2e-25
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM KIWHHTF
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
Score = 103 bits (246), Expect = 9e-23
Identities = 56/107 (52%), Positives = 63/107 (58%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG*WSVWDRRTLM*EMRHR 306
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG ++ +
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 307 AKXXXXXXXXXXXXXXXLTGMTWXRFGIIPFYNELRVTPEEHPVXLT 447
+K + FYNELRV PEEHPV LT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 111 bits (268), Expect = 2e-25
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM KIWHHTF
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 90
Score = 100 bits (239), Expect = 6e-22
Identities = 54/105 (51%), Positives = 62/105 (59%)
Frame = +1
Query: 133 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG*WSVWDRRTLM*EMRHRAK 312
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG ++ ++K
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 313 XXXXXXXXXXXXXXXLTGMTWXRFGIIPFYNELRVTPEEHPVXLT 447
+ FYNELRV PEEHPV LT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 106
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 111 bits (268), Expect = 2e-25
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM KIWHHTF
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 90
Score = 101 bits (242), Expect = 3e-22
Identities = 55/105 (52%), Positives = 62/105 (59%)
Frame = +1
Query: 133 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG*WSVWDRRTLM*EMRHRAK 312
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG ++ ++K
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 313 XXXXXXXXXXXXXXXLTGMTWXRFGIIPFYNELRVTPEEHPVXLT 447
+ FYNELRV PEEHPV LT
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 106
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 111 bits (268), Expect = 2e-25
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM KIWHHTF
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
Score = 107 bits (257), Expect = 4e-24
Identities = 57/107 (53%), Positives = 64/107 (59%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG*WSVWDRRTLM*EMRHR 306
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG ++ +
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 307 AKXXXXXXXXXXXXXXXLTGMTWXRFGIIPFYNELRVTPEEHPVXLT 447
+K + FYNELRV PEEHPV LT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 111 bits (268), Expect = 2e-25
Identities = 49/55 (89%), Positives = 50/55 (90%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM KIWHHTF
Sbjct: 37 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 91
Score = 103 bits (246), Expect = 9e-23
Identities = 54/107 (50%), Positives = 63/107 (58%)
Frame = +1
Query: 127 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG*WSVWDRRTLM*EMRHR 306
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG ++ +
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 307 AKXXXXXXXXXXXXXXXLTGMTWXRFGIIPFYNELRVTPEEHPVXLT 447
+K + FYNELRV PEEHPV LT
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 107
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 100 bits (239), Expect = 6e-22
Identities = 46/55 (83%), Positives = 47/55 (85%)
Frame = +3
Query: 234 GKAPPSGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
G+ GVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDM KI TF
Sbjct: 36 GRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 88.2 bits (209), Expect = 3e-18
Identities = 38/41 (92%), Positives = 41/41 (100%)
Frame = +1
Query: 133 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 255
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG 42
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 1e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +1
Query: 136 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 252
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 59.7 bits (138), Expect = 1e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +1
Query: 151 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 252
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 55.2 bits (127), Expect = 2e-08
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +3
Query: 276 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTF 398
KD VGDEA R +L + YP+++GIV NWDDM +W +TF
Sbjct: 53 KDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTF 93
Score = 44.4 bits (100), Expect = 4e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 145 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 243
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 47.6 bits (108), Expect = 5e-06
Identities = 20/42 (47%), Positives = 28/42 (66%)
Frame = +1
Query: 121 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 246
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQ 734
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 2e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 249 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 133
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 40.7 bits (91), Expect = 5e-04
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +3
Query: 264 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMXKIWHHTFLQ*AACHP 422
G+ D ++GDEA K T K+PI H IV +WD M + W + P
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEP 329
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 32.7 bits (71), Expect = 0.14
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 120 LVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQC 4
L++L C C+K + KR + + Q+P C C C
Sbjct: 620 LLELTTCSCEKSRCKRDDLCPCKSNQMPCTEACQCMNTC 658
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 285 YVGDEAQSKRGILTLKY--PIEHGIVTNWDDMXKIWHHTF 398
++GD+ + + L Y P + G + NWD +IW +TF
Sbjct: 273 FIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTF 312
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +1
Query: 139 EVAALVVDNGSGMCKAGFAGDDAPRAV 219
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 32.3 bits (70), Expect = 0.19
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = -1
Query: 341 DGVFEGQDTSFALCLISYIRVLLSHTDHHP*WRGLPTIEGNTARGASSPAKPALHIPEPL 162
DG F+L L + IR ++ + W GNT R PAKPAL++P P
Sbjct: 41 DGEMRAILNDFSLPLDAKIRHYNRVSNQYLKWLQQLKDGGNTNRRTRIPAKPALNLPSPP 100
Query: 161 STT 153
S T
Sbjct: 101 SKT 103
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 32.3 bits (70), Expect = 0.19
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -3
Query: 132 AHLELVKLVRCRCDKMKIKRPAVTANREKQIPIAGRCPCSTQ 7
A L L+KL CRC K +R + + + IP C C+++
Sbjct: 1296 APLSLLKLTTCRCVKTACRRDDLCSCKANDIPCTEACLCTSE 1337
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 31.9 bits (69), Expect = 0.25
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -1
Query: 266 TDHHP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 153
++ +P W GNT R PAKP+L++P P S T
Sbjct: 526 SNQYPKWLQQVKDGGNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.33
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 224 GNTARGASSPAKPALHIPEPLSTT 153
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_16360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 379
Score = 30.7 bits (66), Expect = 0.58
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 271 PIPTITPDGGAFPRSRGTRREEHHLLRNRPCTYRSHCLLPTRQLL 137
P P + P+ G FP + G +E H L C Y + LLP Q++
Sbjct: 92 PSPDVVPNAGQFPNAEG--QEVHFLCTGPMCRY-AEDLLPLLQIM 133
>SB_59726| Best HMM Match : Keratin_B2 (HMM E-Value=5.9)
Length = 319
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 269 HTDHHP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 126
H HHP + LPT T SP K H P T+A T+++HI
Sbjct: 247 HCPHHP-VQTLPT-SARTNTAHISPCKHCPHQPVQTLPTSARTNTAHI 292
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 269 HTDHHP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 126
H HHP + LPT T SP K H P T+A T+++HI
Sbjct: 222 HCPHHP-VQTLPT-SARTNTAHISPYKHCPHHPVQTLPTSARTNTAHI 267
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 224 GNTARGASSPAKPALHIPEPLSTT 153
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 224 GNTARGASSPAKPALHIPEPLSTT 153
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_4846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -1
Query: 269 HTDHHP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSHI 126
H HHP + LPT T SP K H P T+A T+++HI
Sbjct: 366 HCPHHP-VQTLPT-SSRTNTAHISPYKHCPHQPVQTLPTSARTNTAHI 411
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 27.9 bits (59), Expect = 4.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 260 HHP*WRGLPTIEGNTARGASSPAKPA 183
H P R P +EG +++G SP +P+
Sbjct: 981 HEPPKRVTPVVEGRSSKGDDSPGRPS 1006
>SB_146| Best HMM Match : DUF836 (HMM E-Value=1.5)
Length = 554
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 218 CSPRSWEGPAIRGDGRYGTEGLLCR 292
C+PR W P + +GR T L CR
Sbjct: 274 CAPRQWLEPTEKREGREVTNKLRCR 298
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 239 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 129
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
Length = 530
Score = 27.5 bits (58), Expect = 5.4
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 300 PHLLHKSPSVPYRPSPLMAGPSHDRGEHGARSIISCETG 184
P +H P+VP P+P A P H G G ++C G
Sbjct: 409 PIAVHVPPAVPQHPAPPPAVPQH-VGSPGFSVPLTCPVG 446
>SB_55743| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.1)
Length = 213
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 258 SPLMAGPSHDRGEHGARSIISCETGLAHTGA 166
SP+ GPS +G G R+ G+ HT A
Sbjct: 88 SPVAPGPSEPQGREGLRARADDAFGITHTPA 118
>SB_30230| Best HMM Match : CH (HMM E-Value=0.0035)
Length = 2440
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 191 SQEMMLLAPCSPRSWEGPAIRGD 259
S E + APCSPRS P I G+
Sbjct: 803 SLESSIEAPCSPRSASKPVISGE 825
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 145 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 249
+ +++D GS KAGFA ++A + + S++G H
Sbjct: 483 SVIIIDLGSSSVKAGFAQEEA-QVFYISLIGILEH 516
>SB_15653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -3
Query: 321 GYLFCSVPHLLHKSPSVP---YRPSPLMAGPSHDRGEHGARSIISCET 187
G+ FC +P+ + P P +P P + G S R EH S +S ET
Sbjct: 238 GFAFC-IPYKVEVCPYHPRQQIQPCPPVIGGSLSRDEHAVDSPMSRET 284
>SB_21216| Best HMM Match : Pox_A32 (HMM E-Value=0.01)
Length = 1062
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 258 SPLMAGPSHDRGEHGARSIISCETGLAHTGA 166
SP+ GPS +G G R+ G+ HT A
Sbjct: 813 SPVAPGPSEPQGREGLRARADDAFGITHTPA 843
>SB_13206| Best HMM Match : Extensin_2 (HMM E-Value=0.031)
Length = 1099
Score = 26.6 bits (56), Expect = 9.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = -3
Query: 300 PHLLHKSPSVPYRPSPLMAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFVAH 127
P L+H+ P + +RP ++ P H +I L H AIV++ N ++H
Sbjct: 996 PLLIHRMPLIVHRPDLMVHRP--PLIIHRMPILIHHHPWLIHRPAIVHHYGPNLMISH 1051
>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1077
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +1
Query: 124 KMCDEEVAALVVDNG-SGMCKAGFAGD 201
++CD++ + +N MCKAG+ GD
Sbjct: 487 RLCDKDAVCRLENNAIKCMCKAGYTGD 513
>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
Length = 425
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 189 TGLAHTGAIVYYQRGNFFVAHLELVKLVRC 100
+G +T A VY+QRGN + H + V + C
Sbjct: 358 SGRGNTWA-VYFQRGNTWTVHFQRVNTMGC 386
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,954,627
Number of Sequences: 59808
Number of extensions: 364796
Number of successful extensions: 974
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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