Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0627.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   4.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.7  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   4.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   6.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   8.2  

>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 81  IKRPAVTANREKQIPIAGR 25
           IK P + ANR K   IAG+
Sbjct: 284 IKLPKLAANRAKLEEIAGK 302


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 267 YRPSPLMAGP 238
           YRP P M+GP
Sbjct: 553 YRPKPRMSGP 562



 Score = 21.0 bits (42), Expect = 6.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 270  PYRPSPLMAG 241
            P+ PSP MAG
Sbjct: 1168 PFMPSPFMAG 1177


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 172 GMCKAGFAGD 201
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 300 PHLLHKSPSVPYRPSPLMAGPSHD 229
           P  + K PS+P  P P+    + D
Sbjct: 642 PKRIRKMPSMPLLPRPISCHTTPD 665


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 231 DRGEHGARSIISCETGLA 178
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 231 DRGEHGARSIISCETGLA 178
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 43  LFLTVSSHCRAFNFHLV 93
           L + V+S C+AF +H V
Sbjct: 284 LRMGVASFCKAFPWHFV 300


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,011
Number of Sequences: 438
Number of extensions: 3120
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)