Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0626.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    27   1.0  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   2.3  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   7.1  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   7.1  

>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -1

Query: 317 VSRSHHSGVNRLLHKPGQGKIAFASKTYSIFL 222
           V + H  G+N L   PG   IA ASK   I L
Sbjct: 333 VLKYHSDGINSLAFHPGSNVIALASKDTRISL 364


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 205 YRCLIQLNTTWSIPCSV*DFKSYLMTSNDFNDNF 104
           +RC      T SIPC++        + ND+N NF
Sbjct: 85  FRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNF 118


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 381 FRQFFYLGRFKYIGRFLHFV*CFQESSFRREQTFTQAWSRKNSLCFENIFDIPYHLRKNI 202
           F +FF    F Y+  + HFV   +  +F  ++     +   N LC E     P+H  +N+
Sbjct: 280 FVEFFRF--FGYLFDYEHFVLSIRHGTFLSKRAKGWQFQLNNFLCVEE----PFHTSRNL 333


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 230 SNMFSKQRLFFLDQACVKVCSRLNDDSWKH---*TKWR 334
           +N  S Q++ +LD+   K   +LND   KH    TKW+
Sbjct: 550 NNATSIQQIQYLDEELGKTLKQLNDLKEKHAQLQTKWK 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,775
Number of Sequences: 5004
Number of extensions: 33168
Number of successful extensions: 81
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)