Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0626.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)                    27   9.5  

>SB_5196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 412

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 415 PPQARPGQAQPLQAVLLPRTVQVHRTLPPLRLVFPGVI 302
           P  +RP  A P     LP+   V R LP L  VFPG++
Sbjct: 318 PSISRPATAPPPVFRGLPQLPPVFRCLPQLPPVFPGLL 355


>SB_16055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 848

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 298 QA*TDFYTSLVKEK*PLLRKHIRYSLPSP*EYRCLIQLNTTWSIPCSV 155
           Q+   +Y   VKEK      H+ +    P   RC I+LN  WS PC V
Sbjct: 738 QSQKSYYDCWVKEKIFKKGDHVLWFDKKPRRGRC-IKLNRPWSGPCIV 784


>SB_15801| Best HMM Match : eRF1_2 (HMM E-Value=4.8)
          Length = 562

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 195 KHRYSYGDGKEYRICFRSKGYFSLTRLV 278
           +H +S GD ++  IC  SK Y  L R V
Sbjct: 432 EHEFSLGDAEKEFICATSKAYEELIRNV 459


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,813,995
Number of Sequences: 59808
Number of extensions: 239824
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)