Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0623.Seq
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       28   0.052
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    27   0.12 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   7.9  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 27.9 bits (59), Expect = 0.052
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 19  FGSQPMHRRR*RIYYWSSVHCTPRLYRNSCVPSHCSLTDSYPYRSKI-QLLYFQIHDFSC 195
           FG+  ++    R YYW +++ T +    SC     + + + P++  +  +LY  I D  C
Sbjct: 143 FGATKVYNSMKREYYWPNMYRTIKKRLRSCDLCQKTKSSNRPHQGPLTPILYDHIGDLVC 202


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 13/63 (20%), Positives = 30/63 (47%)
 Frame = -2

Query: 226 VTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFN 47
           V  EREK  S+ ++ E + +E      +DK +  + G +     K E+  ++ +  + + 
Sbjct: 215 VEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDVGEDEDEDTKKEDKKKKKTIKEKYT 274

Query: 46  DGD 38
           + +
Sbjct: 275 EDE 277


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/29 (31%), Positives = 12/29 (41%)
 Frame = +2

Query: 203 GFFPFDCDAALRAITLAFFVSDDLLVPVS 289
           GFFP D         L  F    +++ VS
Sbjct: 699 GFFPIDYSLVFSETKLLLFKITSVMIAVS 727


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,875
Number of Sequences: 336
Number of extensions: 1250
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)