Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0623.Seq
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 45 7e-06
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.002
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 31 0.093
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 31 0.093
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 31 0.12
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.16
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 30 0.22
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.38
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 29 0.38
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 28 0.66
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 28 0.87
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.1
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 1.1
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.5
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 27 1.5
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 1.5
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 27 2.0
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 26 2.7
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 26 2.7
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 2.7
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 2.7
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 26 2.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 2.7
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 2.7
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 26 2.7
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 26 2.7
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 26 2.7
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 3.5
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 3.5
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 3.5
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 3.5
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 3.5
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 26 3.5
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 4.6
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 4.6
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 4.6
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 4.6
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.1
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 6.1
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom... 25 6.1
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 8.1
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 8.1
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 8.1
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 8.1
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 8.1
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 8.1
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 44.8 bits (101), Expect = 7e-06
Identities = 27/79 (34%), Positives = 41/79 (51%)
Frame = -2
Query: 262 NEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE 83
+ EG S S + SE N S + E+ESS+ + S +S SE +SS KD +
Sbjct: 212 SSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSD 271
Query: 82 YSEQNSSNKSFNDGDASAD 26
+SSN S ++ D+S+D
Sbjct: 272 ----SSSNSSDSEDDSSSD 286
Score = 33.9 bits (74), Expect = 0.013
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Frame = -2
Query: 256 EGKRDGSKSGVTVEREKSESNKK----SREFENKEAESSTYRDKNRSVNSGSERKSSGKD 89
E +GS S + +SES+ + S + E+ESS+ + S +S SE +SS +
Sbjct: 156 ESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEG 215
Query: 88 EEYSEQNSSNK---SFNDGDASA 29
+ S +SS++ S D D+S+
Sbjct: 216 SDSSSSSSSSESESSSEDNDSSS 238
Score = 27.1 bits (57), Expect = 1.5
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Frame = -2
Query: 262 NEEGKRDGSKSGVTVEREKSESNKKSREFE-NKEAESSTYRDKNRSVNS-GSERKSSGKD 89
+ E + S T S+S+ S + N + +S S NS SE +S KD
Sbjct: 289 DSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVKD 348
Query: 88 EEYSEQNSSNKSFNDGDASADYQTKSKK 5
E+ S+ + + D + TKS +
Sbjct: 349 EDSSKIHDKSLKRKHEDDESSTSTKSSR 376
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.002
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Frame = -2
Query: 250 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSER--KSSGKDEEYS 77
K++ S S E SES S E E+ +ES + ++ S S E K+ K E S
Sbjct: 79 KKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSS 138
Query: 76 EQNSSNKSFNDGDASADYQTKSK 8
E +SS++S + +A + K +
Sbjct: 139 ESSSSSESEEEEEAVVKIEEKKE 161
Score = 36.3 bits (80), Expect = 0.002
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Frame = -2
Query: 226 VTVEREKSESNKKSREFENKEAES---STYRDKNRSVNSGSERKSSGKDEEYSE-QNSSN 59
V +E +K S+ S E + E+ES S+ ++ V +E K G E S+ ++SS+
Sbjct: 154 VKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSD 213
Query: 58 KSFNDGDASADYQTKSK 8
S GD+ + ++S+
Sbjct: 214 SSSESGDSDSSSDSESE 230
Score = 29.5 bits (63), Expect = 0.28
Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Frame = -2
Query: 262 NEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSS--GKD 89
+E + S E SES S E + E+E S SE SS ++
Sbjct: 89 SESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEE 148
Query: 88 EEYSEQNSSNKSFNDGDASAD 26
EE + K + D+S++
Sbjct: 149 EEEAVVKIEEKKESSSDSSSE 169
Score = 25.4 bits (53), Expect = 4.6
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = -2
Query: 259 EEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEY 80
+EG + S + SES S + E+ESS+ +K R SE + + +
Sbjct: 198 KEGSSESSSDSESSSDSSSESG-DSDSSSDSESESSSEDEKKRKAEPASEERPAKITKPS 256
Query: 79 SEQNSS 62
+ N +
Sbjct: 257 QDSNET 262
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.1 bits (67), Expect = 0.093
Identities = 16/89 (17%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -2
Query: 268 IRNEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKD 89
++ ++ +S SES E E++E+E + K + + SE S +
Sbjct: 30 LKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSE 89
Query: 88 EEYSEQNSSNKSFND-GDASADYQTKSKK 5
EE ++ + +D ++ ++ +++S++
Sbjct: 90 EEEETESEEDSEVSDESESESESESESEE 118
Score = 27.5 bits (58), Expect = 1.1
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 205 SESNKKSREFENKE-AESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSF 50
SES+++ E E++E +E S + S SE +S ++E + S SF
Sbjct: 85 SESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSF 137
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 172 NKEAESSTYRDKNRSVNSGSERK-SSGKDEEYSEQNSSNKSFNDGDASADYQTKSK 8
+ +AES ++NR +S +++ S +EE SE+ S++ S ++ +S+
Sbjct: 11 DSDAESVDSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESE 66
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 31.1 bits (67), Expect = 0.093
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = -2
Query: 295 IFRDRNQ*IIRNEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSG 116
++ + N+ + + G ++ S T E E E +KS E + + + +R++ G
Sbjct: 15 LYGEENEKKVESASGNQETSNVTPTKENEGYEELEKSGEAGAERTKENPFREE-----PG 69
Query: 115 SERKSSGKDEEYSEQNSSNK 56
++ SG D++YS + +N+
Sbjct: 70 ADFDRSGSDQQYSAEAEANQ 89
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 30.7 bits (66), Expect = 0.12
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = -2
Query: 220 VEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDG 41
+ER + NKKSR +E + R+K S +E+ S KD+ +N+ N +ND
Sbjct: 34 LERNNKQKNKKSRNQVRRE-KKKLLREKTNSGAKLAEKNSDDKDQ--LTENNDNL-YNDK 89
Query: 40 DASADYQTKSK 8
++ ++ +K
Sbjct: 90 KSNGNFYDTNK 100
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 30.3 bits (65), Expect = 0.16
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = -2
Query: 217 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGD 38
E E ++++ + ++ E S + + +++ K +S + SSN S ND D
Sbjct: 127 ENEIADNDLEPEVYDILYEEESKLGESRDLIRRLKQKRFETKKNNFSVKESSNLSNNDSD 186
Query: 37 ASADYQT 17
AS D T
Sbjct: 187 ASLDEDT 193
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 29.9 bits (64), Expect = 0.22
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = -2
Query: 259 EEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEY 80
EE K S+ T + KSE KK E + +E SST + S + + S+ KD+
Sbjct: 199 EEDKEIHSEENETKDEIKSE--KKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQPS 256
Query: 79 SEQNSSN 59
E+ ++
Sbjct: 257 EEEEKTS 263
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 29.1 bits (62), Expect = 0.38
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -2
Query: 247 RDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN 68
R + + V RE+S +NK E + +DKN+ + E +S ++ S
Sbjct: 1484 RVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDISGE-SNSRQNNAISRAG 1542
Query: 67 SSNKSFNDGDASAD 26
SN S N G+ S D
Sbjct: 1543 RSNGS-NRGNDSRD 1555
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 29.1 bits (62), Expect = 0.38
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 11/93 (11%)
Frame = -2
Query: 265 RNEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTY-----RDKNRSVNSGSERKS 101
+ KR S GV ++EK +S S E ESS++ +D + + S + S
Sbjct: 4 KRSRSKRANSNVGVEKDKEKEKSKGVSNVPNEVETESSSHEPSFKKDVDEEIPSLTAELS 63
Query: 100 SGKDEEYSEQNS------SNKSFNDGDASADYQ 20
++ EYS ++ S F D D +++
Sbjct: 64 EEEEGEYSSESGRSTPELSPDDFEDADDEEEFE 96
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.66
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = -2
Query: 271 IIRNEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESST-----YRDKNRSVNSGSER 107
+IR + S VE+++S ++ S ++ + + ++ Y D + S +S E+
Sbjct: 239 LIRLTRSRARSSNEASYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKEK 298
Query: 106 KSSGKDEEYSEQNSSNKSF 50
+S K E+Y + + S+K+F
Sbjct: 299 QS--KIEKYMKSDKSSKNF 315
>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 461
Score = 27.9 bits (59), Expect = 0.87
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = -2
Query: 211 EKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN--SSNKSFNDGD 38
EK++S S E E AE+S DKN +E ++ DE+ Q+ +N N D
Sbjct: 175 EKTKS-PISNENEKSAAETSIKEDKNGDAAKKNEGSANQDDEKLHSQSLVGNNCEVNSED 233
Query: 37 ASADYQTK 14
+D +++
Sbjct: 234 EFSDLESE 241
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.5 bits (58), Expect = 1.1
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = -2
Query: 259 EEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEY 80
E+ KR+ ++ EK + + E E DKN + S + SS + +
Sbjct: 671 EKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDT 730
Query: 79 SEQNSSNK 56
S+Q ++ +
Sbjct: 731 SKQTNATE 738
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -2
Query: 217 EREKSESNKKSREFEN---KEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSF 50
+R++ K RE+ + K+ + Y D S S +K S + + Y+E+ + ++S+
Sbjct: 317 KRDRDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSYKKRSHRSDRYTERENPDRSY 375
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/53 (26%), Positives = 23/53 (43%)
Frame = -2
Query: 250 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGK 92
KR+ K +ER+K E +K +E E K + D+ + R+ K
Sbjct: 647 KREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEK 699
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/48 (27%), Positives = 26/48 (54%)
Frame = -2
Query: 217 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSE 74
ERE E+ ++ R ++ ++S RD+ R + +E + K++E E
Sbjct: 253 EREAREAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEERE 300
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 27.1 bits (57), Expect = 1.5
Identities = 21/82 (25%), Positives = 36/82 (43%)
Frame = -2
Query: 271 IIRNEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGK 92
+ ++ E ++ + + +E++K KKS + + + ESS K + +KS K
Sbjct: 434 VTKDAEESQEDVEMDIVIEKKK----KKSSKLKEADGESSKKEKKEK--KDKKHKKSKRK 487
Query: 91 DEEYSEQNSSNKSFNDGDASAD 26
EE SE S K S D
Sbjct: 488 SEE-SEDGESPKKKKKSKKSKD 508
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 26.6 bits (56), Expect = 2.0
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 333 DSXXNRGKDTDDKYSETGTNKSSETKKASVMARRAASQSKGKNPN 199
+S N GK+ K + KSSET K A AA+ +K K N
Sbjct: 72 ESKVNEGKNEAAKVVKEEDLKSSETGKDVETAAAAAAAAKKKKKN 116
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Frame = -2
Query: 256 EGKRDGSKSGVTVEREKSESNKKSRE-FENKEAESSTYRDKNRSVNSGSERKSSGKDEEY 80
EG R+ S + V +E+ + + F N E ES + SVN + S +
Sbjct: 15 EGSRESSNDELKVLLRDTETKEDEKSSFSNSEEESIIENLSDSSVNKEYAKNSLKLSDAV 74
Query: 79 SEQNSSNKSFND 44
SE N D
Sbjct: 75 SESKYLNPLLKD 86
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 2.7
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Frame = -2
Query: 268 IRNEEGKRDGSKSGVTVEREKSESNKKSREFENKE-AESSTYRDKNRSVNSGSERKSSGK 92
+ ++ KRD + + R K + EF E +ESS + + S E
Sbjct: 644 LSSDNFKRDFGDTNA-INRPKFVGQQTLEEFYASETSESSEGEYETSTSESEDEETDDTS 702
Query: 91 DEEYSEQNSSNKSFNDGDASADYQTKS 11
EE +E+NS+ + + ++ TKS
Sbjct: 703 QEEDNEKNSTPDEDTENNNTSSISTKS 729
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -2
Query: 211 EKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKS 53
E S+++ +FEN+E++ ++ + + K+ K E EQ S K+
Sbjct: 714 EASQNDVSEDDFENEESDDDKIFEQQTKIE--DDVKNENKTEPVEEQKSEEKN 764
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = -2
Query: 238 SKSGVTVEREKSE--SNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE-YSEQN 68
SK + ++ E+S+ S + + + ++S D+N + + SE K DEE SE
Sbjct: 733 SKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIA 792
Query: 67 SSNKSFND 44
S F+D
Sbjct: 793 HSEDEFDD 800
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = -2
Query: 271 IIRNEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVN-SGSERKSSG 95
+ R ++ + D ++G + SN ++ A S+Y + + N S SE +S
Sbjct: 58 LAREQKEELDEEENGKPSQISAFISNGHQKDTLENPAIESSYEESEHARNVSDSESITSQ 117
Query: 94 KDEEYSE 74
++EEY E
Sbjct: 118 EEEEYEE 124
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = -2
Query: 187 SREFENKEAESSTYRDKN--RSVNSGSERKSSGKD 89
++EFENK + ++T +D R N G+ R S D
Sbjct: 520 TKEFENKFSNANTAKDDEPARQTNKGTTRISRSSD 554
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 26.2 bits (55), Expect = 2.7
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -2
Query: 250 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNR 131
+RD ++ + +E +S+ ++ R+ N++ S T R+K +
Sbjct: 69 ERDSTQRTLQIESLESKIGEQERDLNNEKLASETLREKTQ 108
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -2
Query: 205 SESNKKSREFENKEAESSTYRDKNRSVNSGSER--KSSGKDEEYSEQNSSNKSFNDGDAS 32
+E+ +K+ N + + D +V + SE+ K KD++ ++ S K + DAS
Sbjct: 425 AEAYEKALSSVNIDGDEEVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKKKRSADDAS 484
Query: 31 ADYQTKSKK 5
+ + KK
Sbjct: 485 EEVKKSKKK 493
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 287 RQEPINHQKRRRQA*WLEERRHSRKGKIRIQQEK 186
++E IN KRR + RRHS+KG + ++E+
Sbjct: 398 KREEINSLKRREE----NIRRHSKKGAVPYEKER 427
>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 2.7
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -2
Query: 244 DGSKSGVTVE-REKSESNKKSREFE-NKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQ 71
D K +VE R+K +S+ + + ++ + S+Y S S G++E+YS
Sbjct: 77 DTKKGFNSVESRKKEQSDVRGGDTSYSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTS 136
Query: 70 NSS 62
S
Sbjct: 137 GGS 139
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.8 bits (54), Expect = 3.5
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -2
Query: 220 VEREKSESNKKSREFEN----KEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSS 62
++RE E + SR+F N K ST K R++ +GS ++ K E SE S
Sbjct: 1209 IQREMLEEEQSSRDFVNRTKKKPRGKSTGTRKPRAI-AGSSSSTAVKKEASSESKPS 1264
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 3.5
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = -2
Query: 175 ENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKS 11
+ K A S KNR S + + + S Q+S S GD++ D +KS
Sbjct: 34 KGKSALRSALEKKNRKSKSKPKVTITSDTPKVSSQHSPVSSAYTGDSTTDLDSKS 88
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -2
Query: 217 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE-YSEQNSS 62
ER S SN+K E+ ST+ + R+++ DE+ + EQ +S
Sbjct: 929 ERAHSYSNRKQASSESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQEQTTS 981
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 157 SSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 17
SS +RS S S++ YSE+NSSN G S D T
Sbjct: 166 SSQQPPNDRSTLSSSQKAKRPLKRSYSEKNSSNAE-PSGSRSGDRGT 211
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 220 VEREKSESNKKSREFENKEA-ESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 44
V + K E ++ E A + ++++ +V E K KD++ SSNK+ +
Sbjct: 318 VHKSKEEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKKEGITSSNKNDDS 377
Query: 43 GD 38
G+
Sbjct: 378 GN 379
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 289 RDRNQ*IIRNEEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKN-RSVNSG 116
RDR + +RD +SG RE S +K + + S RD +S +SG
Sbjct: 16 RDRRSRFTEDSYSRRDSQRSGNEAPRE-SRYYRKEEHLQERSRSRSPARDSRWKSSSSG 73
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 4.6
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -2
Query: 259 EEGKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGK 92
E KR+ SK + +K + KKS+ + ++ + + K R S KS K
Sbjct: 137 ESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLK 192
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/58 (20%), Positives = 29/58 (50%)
Frame = -2
Query: 217 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 44
++++ KK +++ + ++ RS + S+ K DE+ E ++NK+ +D
Sbjct: 38 KKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELENANKTLSD 95
>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 801
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 175 ENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDA 35
E++E E S + R + + +DEE S+ S F+DG+A
Sbjct: 373 EDEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADFSDGEA 419
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -2
Query: 211 EKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDAS 32
E + + K++ + S DK+R+ S K S K++ S +DG++S
Sbjct: 464 ENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNKDSEKNDNNDASLQSAGVASDGESS 523
Query: 31 ADYQ-TKSKK 5
+ TK+ K
Sbjct: 524 PETPLTKASK 533
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 25.0 bits (52), Expect = 6.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -2
Query: 217 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNK 56
EREK ESN S + E+ + ++T S N+ S+ + ++ Y + S K
Sbjct: 45 EREKVESNPNSSDEEDLTSTNNT----RSSDNTTSDTEDDSGEDSYQVEWESGK 94
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -2
Query: 235 KSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 59
K T +E S + + + E + D+N +V+ E SS + SE+N +
Sbjct: 70 KGRKTSRQELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDD 128
>SPCC970.04c |mob2||protein kinase activator
Mob2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 252 PSSFLMIYWFLSRNIYRQYPFLYXXHY 332
PS+FL+I + + ++R + +Y HY
Sbjct: 168 PSNFLVIVKAIYKQMFRIFAHMYYAHY 194
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = -1
Query: 320 IEERILTINIPRQEPINHQKRRRQA*WLE-ERRHSRKGK 207
I ER+ ++ + +QE IN K+R +A LE E+ H+ +G+
Sbjct: 281 IRERLESLILEKQEEINFWKQRCRA--LETEKIHNHQGQ 317
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 190 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 59
K + +NK + KN + NS + RK++ EYS N
Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 190 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 59
K + +NK + KN + NS + RK++ EYS N
Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 24.6 bits (51), Expect = 8.1
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -2
Query: 220 VEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFN-D 44
+E EK E+N + N+E E+++ +S S + + E E+N+ N +
Sbjct: 437 LEDEKEENNTAAESLINQE-ETTSGEAVTKSTVESSANEEEAEPNEIIEENAVKSLLNQE 495
Query: 43 GDASADYQTKS 11
G A+ + K+
Sbjct: 496 GPATNEEVEKN 506
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 190 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 59
K + +NK + KN + NS + RK++ EYS N
Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.1
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 190 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 59
K + +NK + KN + NS + RK++ EYS N
Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,349,502
Number of Sequences: 5004
Number of extensions: 22197
Number of successful extensions: 210
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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