Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0622.Seq
         (488 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    25   0.49 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   1.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   2.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   2.0  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   7.9  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.9  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 24.6 bits (51), Expect = 0.49
 Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
 Frame = +1

Query: 313 NLTYFLQVEE---KTYTNISTC 369
           +  YFL+V     KTY+N++TC
Sbjct: 94  DFAYFLEVSNNNFKTYSNVTTC 115


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 3/22 (13%)
 Frame = -3

Query: 375 CDACRYIC---VSFFLHLQKIS 319
           C+ C   C   VSFFLH+ ++S
Sbjct: 501 CNMCGVECSDKVSFFLHIARVS 522


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 228 SITVTTPNSRSNGRHRRETMHF*IKEDPDISNHFNK 121
           S T  T   +SN  H  +   +  K + +  NH++K
Sbjct: 313 SKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSK 348


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 228 SITVTTPNSRSNGRHRRETMHF*IKEDPDISNHFNK 121
           S T  T   +SN  H  +   +  K + +  NH++K
Sbjct: 205 SKTKETNLEKSNLNHNEQLRKYLCKNEDETKNHYSK 240


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 454 FHVSWVADKASFVFPVNLS 398
           F    +    SF FP+NLS
Sbjct: 151 FSCKVMIQSVSFAFPINLS 169


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 454 FHVSWVADKASFVFPVNLS 398
           F    +    SF FP+NLS
Sbjct: 384 FSCKVMIQSVSFAFPINLS 402


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 454 FHVSWVADKASFVFPVNLS 398
           F    +    SF FP+NLS
Sbjct: 384 FSCKVMIQSVSFAFPINLS 402


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,660
Number of Sequences: 336
Number of extensions: 2415
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)