Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0622.Seq
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    29   0.50 
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    27   1.1  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    26   2.7  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    26   3.5  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    25   4.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.1  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   8.1  

>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 28.7 bits (61), Expect = 0.50
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -2

Query: 331 AENKSNFVPMIGNDFLCG-ISSMVRRDYEA*LTLNIDYCYDS 209
           +E + +FVP +G+  LCG  S+ +R  Y+  ++  ID  Y S
Sbjct: 694 SEEQEDFVPAVGHCKLCGKYSNELRAHYQDCVSSTIDRQYQS 735


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 195 NGRHRRETMHF*IKEDPDISNHFNKPRTQ 109
           NG H+    H   KE   I  HF KPR Q
Sbjct: 453 NGVHKSVVKHLDEKETWSIKYHFRKPRDQ 481


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 352 TNISTCVTSN*DLYSTRD*QERQNLLY---QRPNSHEKFILKFKKE 480
           + +  C+ S+ D   +   QE +NLL    QR   HEK I + KKE
Sbjct: 209 SELRNCINSSKD---SNQIQELENLLRKEKQRNTEHEKIIRRMKKE 251


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = +1

Query: 142 IRILFNLKMHRFPSMSSIRSAVRSR---NSNRCSMSTKPHNLYVP*MR 276
           I I     M  FPS SS    +R     NS +C      HN Y P M+
Sbjct: 249 ITISAGTSMSHFPSASSKLIQMRRHAHMNSEKCDPELLSHNEYFPMMK 296


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 186 HRRETMHF*IKEDPDISNHFNKPRTQCGNGSWK 88
           H  ET    +K DP I++ F +   +CG GS K
Sbjct: 158 HLEETQ---VKFDPSITDEFLEAYVRCGEGSDK 187


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 86  LNEILFYSAKPFEDFFLKW 30
           LNE LF     F+  FLKW
Sbjct: 570 LNENLFVGQSSFKSVFLKW 588


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 331 QVEEKTYTNISTCVTSN*DLYSTRD*QERQNLLYQ 435
           Q+EE T+T++ST VT+N       D   + N +Y+
Sbjct: 214 QIEE-TFTSLSTFVTNNWSPSEYEDVMVKSNKVYE 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,014,387
Number of Sequences: 5004
Number of extensions: 40394
Number of successful extensions: 86
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)