Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0622.Seq
         (488 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0848 - 28677545-28677635,28677760-28677887,28678020-286781...    33   0.16 
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877...    30   0.87 
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57...    29   1.5  
11_03_0126 + 10371536-10371596,10372467-10372544,10373968-103741...    28   3.5  
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23...    28   4.6  

>04_04_0848 -
           28677545-28677635,28677760-28677887,28678020-28678126,
           28678242-28678320,28678426-28678515,28678603-28678854,
           28680351-28680497,28680711-28681035,28681177-28681406
          Length = 482

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 279 PHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGK 416
           P     PIIG  F  F A    ++  Y   R ++ GP+F   L G+
Sbjct: 44  PGSMGFPIIGETFQFFRASPSIDMPSYYKQRLERYGPLFKTSLVGR 89


>07_03_0391 -
           17587144-17587323,17587460-17587566,17587664-17587742,
           17587850-17587939,17588337-17588588,17588748-17588894,
           17589071-17589246,17589303-17589394,17589582-17589673
          Length = 404

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 297 PIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGK 416
           P++G  F  F A    ++  Y   R ++ GP+F   L G+
Sbjct: 4   PVVGETFQFFRASPSVDMPSYYKQRLERYGPLFKTSLVGQ 43


>02_01_0084 -
           573638-574305,574705-574900,574997-577246,578053-579174,
           579266-579370,579975-580028,580244-580344,580454-581423,
           582030-582203,582341-582643,582719-582856,582993-583247,
           584230-584370,585008-585289,585395-585540,585627-585690,
           585723-585799,586285-586301,587728-587867,587972-588029,
           588121-588218,588727-588776,589260-589743
          Length = 2630

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +3

Query: 246 AS*SLRTIDEMPH---KKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGK 416
           AS  L  +D+M +   KKSL +I   F    AGG K  +   D+ H + GP  YER+  +
Sbjct: 783 ASGKLLVLDKMLNEIKKKSLRVI-LLFQSDRAGGNKMGNILEDLMHHRFGPESYERVEYR 841

Query: 417 TKLA 428
             L+
Sbjct: 842 AVLS 845


>11_03_0126 +
           10371536-10371596,10372467-10372544,10373968-10374127,
           10374286-10374610,10374708-10374860,10374985-10375236,
           10375356-10375445,10375543-10375621,10375712-10375818,
           10375921-10376048,10376329-10376419
          Length = 507

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 279 PHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGK 416
           P     PI+G  F  F      ++  Y   R ++ GPIF   + G+
Sbjct: 67  PGSMGFPIVGETFQFFRTSPSIDMPIYYKRRLERYGPIFKTNIGGQ 112


>09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-236292,
            236508-236636,237516-237589,237836-237968,239366-239584,
            239671-239756,239843-241107,241304-241640,242548-242862,
            243614-243697,243776-243883,243981-244079
          Length = 1175

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +2

Query: 122  LLKWLLISGSSLI*-KCIVSRR--CLPLDRLLGVVTVIDVQCQLSL 250
            L  W L SG  L   +C  S R  C+ +D   GVV V D  CQL L
Sbjct: 1110 LYAWELSSGRKLAGTQCFNSGRVSCVAVDAKSGVVAVADDGCQLVL 1155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,236,623
Number of Sequences: 37544
Number of extensions: 231384
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)