Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0622.Seq
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   3e-05
SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   4e-05
SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)                  34   0.072
SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)                 29   1.6  

>SB_24846| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 28/77 (36%), Positives = 37/77 (48%)
 Frame = +3

Query: 258 LRTIDEMPHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLALSA 437
           +R   E+P  K LP IG+  D    GG   LH       K+ GPI+ + L G T + +S 
Sbjct: 56  IRPFQEIPGPKGLPWIGSIHDYILKGGFSKLHLLRQSYFKRYGPIYKDHLMGTTTVNISD 115

Query: 438 TQLT*KVYS*I*EGKYP 488
            +   KV     EGKYP
Sbjct: 116 PEEITKVIR--NEGKYP 130


>SB_24479| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 758

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 27/77 (35%), Positives = 38/77 (49%)
 Frame = +3

Query: 258 LRTIDEMPHKKSLPIIGTKFDLFSAGGGKNLHKYIDMRHKQLGPIFYERLTGKTKLALSA 437
           +R   E+P  K LP IG+       GG   LH       K+ GPI+ + L G T +++S 
Sbjct: 3   IRPFQEIPGPKGLPWIGSIHGYILKGGVSKLHLLHQSYFKKYGPIYKDHLMGTTTVSISD 62

Query: 438 TQLT*KVYS*I*EGKYP 488
            +   KV+    EGKYP
Sbjct: 63  PEDIAKVFR--NEGKYP 77


>SB_23796| Best HMM Match : p450 (HMM E-Value=1.3e-19)
          Length = 461

 Score = 33.9 bits (74), Expect = 0.072
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +3

Query: 258 LRTIDEMPHKKSLPIIGTKFDLFSAGGG-KNLHKYIDMRHKQLGPIFYERLTGKTKLALS 434
           +R  +E+P   +LP +G+     S   G K + +       + GPI+ E L G+T + + 
Sbjct: 41  VRPFEEIPGPIALPYVGSVHRYMSEKDGFKKMFRVQKKLFDEYGPIYKENLFGRTSVNIL 100

Query: 435 ATQLT*KVYS*I*EGKYP 488
               + KV+    EGKYP
Sbjct: 101 YPAESEKVFR--AEGKYP 116


>SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)
          Length = 239

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 70  NKISFSFPGTVAALCSRFIKVVTYIRILFNLKMHRFPSMSSIRSAVRSRNSNRC 231
           NKIS  F GT+   C R + V     +L  +  H F  +  ++S   SRN   C
Sbjct: 81  NKISPIFEGTITT-CVRLMTVDLSRNLLKRVFKHYFSGLEDLKSVNLSRNVIEC 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,418
Number of Sequences: 59808
Number of extensions: 287623
Number of successful extensions: 617
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)