Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0622.Seq
         (488 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88311-3|AAB42345.1|  526|Caenorhabditis elegans Udp-glucuronosy...    29   2.4  
AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical p...    27   9.7  
AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U88311-3|AAB42345.1|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein27 protein.
          Length = 526

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 65  NKIKSR---LVFQEPLPHCVLGLLKWLLISGSSLI*KCIVSRRCLPLDRLLGVVTVIDVQ 235
           +++KSR   +   EPL  C LGL K L I       K I++  C   D L   +   DV 
Sbjct: 132 DQLKSRNFDVAIVEPLSVCGLGLAKKLEIG------KTILASSCAYYDYLFRHIGEPDVH 185

Query: 236 CQLSLIISTYHR*DAT*EIITNHR 307
             L  ++ST      T E + NHR
Sbjct: 186 SYLPSLMSTTGDVMTTFERLENHR 209


>AF077530-2|AAC26265.1|  436|Caenorhabditis elegans Hypothetical
           protein C40D2.2 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +1

Query: 355 NISTCVTSN*DLYSTRD*QERQNLLYQRPNSHEKFILKFKKENI 486
           N S  +  + D+ S+    E++ L Y +PNS+  F+LK   +NI
Sbjct: 114 NESIIIEIHADIVSSTGFFEQKYLKYLQPNSNNSFVLKHTFKNI 157


>Z72502-12|CAI46558.2|  303|Caenorhabditis elegans Hypothetical
           protein C08B6.13 protein.
          Length = 303

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 405 ISRRI*VLIACDACRYICVSFFLHLQKISQILFL*LVMISYVASHLWYVEIMR 247
           I+  I V +  + C++  V + L  +  S + FL  V + ++   +W V  +R
Sbjct: 39  ITHMIWVELVLNFCQHFSVEYVLEAEDESSLHFLESVCVLFMTLQMWTVNTIR 91


>AC006723-3|AAF59427.1|  881|Caenorhabditis elegans Hypothetical
           protein Y19D10B.4 protein.
          Length = 881

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 200 DLMEDIDGKRCIFKLKRILI*VTTLINREHNAATVPGKLNEI 75
           D+  D+     +   K I +      NR+HNA  + G  NE+
Sbjct: 393 DMHIDVGNGMAVIGAKSIFLGTKNSANRDHNAHDLSGNANEL 434


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,148,147
Number of Sequences: 27780
Number of extensions: 226493
Number of successful extensions: 487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)