Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0622.Seq
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    27   0.14 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    24   0.76 
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    24   0.76 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   1.00 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   4.0  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.0  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         21   5.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   5.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   5.3  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.0  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 26.6 bits (56), Expect = 0.14
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +3

Query: 261 RTIDEMPHKKSLPIIGTKFDLFSAGGGKNLHKYID 365
           +T+ ++P   SLPI GT++ +FS  G   L+K  D
Sbjct: 48  KTVSKVPGPFSLPIFGTRW-IFSCIGYYKLNKIHD 81


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 136 TYIRILFNLKMHRFPSMSS 192
           T++R+L +L MH +P + S
Sbjct: 126 TFLRVLLHLAMHDYPPLVS 144


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 136 TYIRILFNLKMHRFPSMSS 192
           T++R+L +L MH +P + S
Sbjct: 94  TFLRVLLHLAMHDYPPLVS 112


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 258 LRTIDEMPHKKSLPIIGTKFDLFSA 332
           L   +++P   +LP+IG   DLF +
Sbjct: 38  LELAEKIPGPPALPLIGNALDLFGS 62


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 128 LINREHNAATVPGKLNEILFYSAKP 54
           + N E +   VPGK NEI +Y+  P
Sbjct: 192 ITNGEWDLLGVPGKRNEI-YYNCCP 215


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = +1

Query: 178 PSMSSIRSAVRSRNSNRCSMSTKPH 252
           P  S+  + VR+  ++ CS++  PH
Sbjct: 332 PMTSTKSTIVRNHLNSTCSVTNSPH 356



 Score = 20.6 bits (41), Expect = 9.3
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 407 NRKDKTCFISDPTHMKSLFLNLRRK 481
           N  + TC +++  H K L  +L ++
Sbjct: 343 NHLNSTCSVTNSPHQKKLRFHLAKE 367


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 128 KWLLISGSSLI*KCIVSRR 184
           KWL I+ S+   +C+  RR
Sbjct: 72  KWLSINHSACAIRCLAQRR 90


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 138 SNHFNKPRTQCGNGSWKTKRDFIL 67
           S+ F + +T    G W +K +FIL
Sbjct: 7   SSAFKEIKTLPDRGMWSSKIEFIL 30


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 138 SNHFNKPRTQCGNGSWKTKRDFIL 67
           S+ F + +T    G W +K +FIL
Sbjct: 60  SSAFKEIKTLPDRGMWSSKIEFIL 83


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +2

Query: 263 YHR*DAT*EIITNHRNKI*LIFCRWRKKLTQIYRHASQAIRTYILREI-NRKDKTCFIS- 436
           YH  D T  +  N  + + +I  +    L Q+YR    A+     R + +  D+  F++ 
Sbjct: 210 YHNDDKTFLVWCNEEDHLRIISMQMGGDLGQVYRRLVHAVNEIEKRLLFSHNDRLGFLTF 269

Query: 437 DPTHM 451
            PT++
Sbjct: 270 CPTNL 274


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,950
Number of Sequences: 438
Number of extensions: 2848
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)