Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0621.Seq
(449 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 138 3e-34
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 138 3e-34
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 138 3e-34
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 78 5e-16
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 72 4e-14
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 46 3e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.004
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.004
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p... 33 0.020
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.11
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.19
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 29 0.25
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.25
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.44
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.44
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.44
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 1.8
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 2.3
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 3.1
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 25 4.1
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 4.1
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 25 5.4
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 7.1
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 7.1
SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 24 9.4
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 24 9.4
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 24 9.4
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 24 9.4
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 138 bits (335), Expect = 3e-34
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 111 bits (266), Expect = 6e-26
Identities = 50/64 (78%), Positives = 54/64 (84%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET Y VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGE AG SK+G
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 138 bits (335), Expect = 3e-34
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 111 bits (267), Expect = 5e-26
Identities = 51/64 (79%), Positives = 54/64 (84%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET Y VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGE AG SK+G
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 138 bits (335), Expect = 3e-34
Identities = 63/69 (91%), Positives = 65/69 (94%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEA E+GKGSFKYAWVL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 111 bits (266), Expect = 6e-26
Identities = 50/64 (78%), Positives = 54/64 (84%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET Y VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGE AG SK+G
Sbjct: 73 IDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 78.2 bits (184), Expect = 5e-16
Identities = 34/65 (52%), Positives = 46/65 (70%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKLK 232
K H+NIV IGHVD+GKST G++++ G +DKRT K E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 233 AERER 247
ERE+
Sbjct: 296 EEREK 300
Score = 61.7 bits (143), Expect = 5e-11
Identities = 26/64 (40%), Positives = 38/64 (59%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
+++ FET +++DAPGH+ ++ NMI G SQAD VL++ GE AG + G
Sbjct: 304 VEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQ 363
Query: 436 XREH 447
REH
Sbjct: 364 TREH 367
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 72.1 bits (169), Expect = 4e-14
Identities = 32/65 (49%), Positives = 43/65 (66%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKLK 232
K +++VV GHVDSGKST G ++++ G I+ R+ K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 233 AERER 247
ER R
Sbjct: 235 EERAR 239
Score = 60.1 bits (139), Expect = 2e-10
Identities = 30/64 (46%), Positives = 35/64 (54%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
+D+A FE+ I DAPGHRDFI MI G S AD AVL+V G +NG
Sbjct: 243 MDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQ 302
Query: 436 XREH 447
REH
Sbjct: 303 TREH 306
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 46.0 bits (104), Expect = 3e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGE 405
++ET+ + +D PGH D+IKNMITG + D A+++V G+
Sbjct: 110 EYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQ 153
Score = 35.1 bits (77), Expect = 0.005
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 133
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 0.76
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.004
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 0.76
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 33.1 bits (72), Expect = 0.020
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Frame = -3
Query: 432 TVLRXTSXXFTGTGXYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNI-- 259
+V+ T T ++ + +SL SC L + S + + S + SN
Sbjct: 109 SVMNETDSSSTSVEDVNKENILSLNDSCLIKLSDDEASNKSSRSSTPRNSIKSNSSNQGH 168
Query: 258 -DL-IPRSRSAFSLSNTQAYLKDPLPISWASFSNFXMVRLSIPPH 130
D+ IP+ A S+ N++ + +D LP + S V+L +P H
Sbjct: 169 GDIPIPKKNPARSVCNSKLFNEDTLPAEFEEVSISPPVKLELPTH 213
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 30.7 bits (66), Expect = 0.11
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 277 FETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
F+ ++T +D PGH F G + AD VL+V G
Sbjct: 215 FDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 29.9 bits (64), Expect = 0.19
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +1
Query: 277 FETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
FE S Y + IID PGH DF + D AVL++ +G
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSG 181
Score = 29.1 bits (62), Expect = 0.33
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 29.5 bits (63), Expect = 0.25
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 295 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+V+ +D PGH + M+ G + D A+L++
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 139
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 35 PKMGKEKTHINIVVIGHVDSGKST 106
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.25
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIV 387
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 28.7 bits (61), Expect = 0.44
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +1
Query: 268 LWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
++ + Y + +ID PGH DF ++ + + +L+V G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDK 148
N VI H+D GKST + ++ G I++
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINE 87
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 28.7 bits (61), Expect = 0.44
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
Y + +ID+PGH DF + + + D A ++V
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLV 125
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.44
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCG 136
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
Score = 28.3 bits (60), Expect = 0.58
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
I+ A F + +ID PGH DF + + D AV I+ G
Sbjct: 81 INSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAG 129
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 307 IDAPGHRDFIKNMITGTSQADCAVLIV 387
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 2.3
Identities = 22/66 (33%), Positives = 30/66 (45%)
Frame = -3
Query: 381 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDLIPRSRSAFSLSNTQAYL 202
EH+A+ L S +L IS R N GNI L S + + S + L+ + A
Sbjct: 5 EHAALPLASS-PSILGPISGGR--NRGNIQLQSIPIEFQAVVFAGFGNSLYPLTGSDALP 61
Query: 201 KDPLPI 184
K LPI
Sbjct: 62 KALLPI 67
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +1
Query: 253 QIDIALWKFETSXYYV--TIIDAPGHRDFIKN 342
+I+I + E +++ T+ID PG DFI N
Sbjct: 72 EIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 227 VCPIPKHI*RILYPFPGPPSRTSXWYVCQYHHICRSSDQWWWT 99
V +PK I I++ F P S S C+Y S D W T
Sbjct: 31 VLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRT 73
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 248 HAHAQPLVCPIPKHI*RILYPFPGPPSRTSXWY 150
H+H PL P+P +L P P P S WY
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRP-PPVPQVPSHWY 166
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.0 bits (52), Expect = 5.4
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -3
Query: 315 SINDGNIVLASFELPESNIDLIPRSRSAFSLSNTQAYLKDPLPISWASFSNFXMVRLSIP 136
S++ + L S+ P S + A ++YL+ PL S S S +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 7.1
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -3
Query: 261 IDLIPRSRSAFSLSNTQAYLKDPL 190
ID++PR+ S++S N+ + +P+
Sbjct: 350 IDMLPRATSSWSTKNSLVFSSNPI 373
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 7.1
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = -3
Query: 381 EHSAISLRGSCDHVLDEISVSRSINDGNIVLASF-ELPESNI-DLIPRSRS 235
EH +IS +G+C+ V + S + +LASF E + +I D+ P RS
Sbjct: 175 EHKSISTKGACNRVRSARRPANSSKES--LLASFHETGKVHIWDIAPHLRS 223
>SPAC1687.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 96
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 351 CDHVLDEISVSRSINDGNIVLASFEL 274
CDH+L IS SR G + FEL
Sbjct: 23 CDHLLQYISNSRDSKAGLKIFLVFEL 48
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -1
Query: 182 PGPPSRTSXWYVCQYHHIC 126
P PP +T Y QY+ +C
Sbjct: 8 PAPPKKTLQLYTPQYYGLC 26
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 24.2 bits (50), Expect = 9.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -3
Query: 381 EHSAISLRGSCDHVLDEISVS--RSINDGNIVLASFELPESNIDLIPRSRSAF 229
+ +I+L GS D ++V+ ++I + VLA +PE+ + LIPR F
Sbjct: 257 KRGSIALIGSGPGSPDLLTVAARKAIMKADYVLADKLVPEAVLQLIPRHTPLF 309
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 24.2 bits (50), Expect = 9.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 68 IVVIGHVDSGKSTTTGHLIYKC 133
IVV+G SGKST + +C
Sbjct: 115 IVVVGETGSGKSTQIPQFLNEC 136
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +2
Query: 71 VVIGHVDSGKSTTTGHLIYKCG 136
+V+GH GK+T +Y+ G
Sbjct: 45 IVLGHTGCGKTTQIPQFLYEAG 66
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,700
Number of Sequences: 5004
Number of extensions: 27263
Number of successful extensions: 109
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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