Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0621.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                93   1e-19
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              77   9e-15
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 76   2e-14
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           63   9e-11
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.19 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   0.77 
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.0  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.3  
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   5.4  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_43604| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_36314| Best HMM Match : DUF845 (HMM E-Value=0.95)                   27   7.2  
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  27   7.2  
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              27   9.5  
SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 42/49 (85%), Positives = 44/49 (89%)
 Frame = +2

Query: 41  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEM 187
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT  KFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 76.6 bits (180), Expect = 9e-15
 Identities = 33/64 (51%), Positives = 44/64 (68%)
 Frame = +1

Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V   TGE  AG    G 
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 436 XREH 447
            REH
Sbjct: 61  TREH 64


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 75.8 bits (178), Expect = 2e-14
 Identities = 33/36 (91%), Positives = 34/36 (94%)
 Frame = +1

Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQ 363
           IDIALWKFET  YYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 25  IDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +2

Query: 185 MGKGSFKYAWVLDKLKAERER 247
           MGKGSFKYAWVLDKLKAERER
Sbjct: 1   MGKGSFKYAWVLDKLKAERER 21


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 63.3 bits (147), Expect = 9e-11
 Identities = 25/64 (39%), Positives = 39/64 (60%)
 Frame = +1

Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
           +++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL++    GE   G  + G 
Sbjct: 210 VEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQ 269

Query: 436 XREH 447
            REH
Sbjct: 270 TREH 273



 Score = 40.3 bits (90), Expect = 7e-04
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = +2

Query: 125 YKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKLKAERER 247
           Y  G +DKRT  K+E+EA+E  + ++  +W LD  + ER++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDK 206


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.19
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 41  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
           +F+     + IID PGH  F      G+S  D A+L+V
Sbjct: 672 EFDIKIPGLLIIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 56  THINIVVIGHVDSGKSTTTGHLIY 127
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = +2

Query: 65   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 245  R 247
            R
Sbjct: 1987 R 1987


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
           +T ID PGH  F      G +  D  VL+V    G
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
 Frame = +2

Query: 38  KMGKEKTHINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTXXKFEKEAQEMGKGSFKYA 211
           K+ +   + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA 87


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 119 LIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKLKAERER 247
           L + CGG+++       +E QE+    F+Y  +L+     RER
Sbjct: 740 LFFGCGGLNEMLSFLAVQEVQELVISVFRYLVMLEDRAQSRER 782


>SB_43604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 315 SINDGNIVLASFELPESNIDLIPRSRSAFSLSNTQAYLKD 196
           S++ G I  +++ +  SN+D+I     AF ++ T+ +L D
Sbjct: 45  SLSRGPIYRSAYPMNHSNVDMIIPEDRAFRVNYTEEFLLD 84


>SB_36314| Best HMM Match : DUF845 (HMM E-Value=0.95)
          Length = 248

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 315 SINDGNIVLASFELPESNIDLIPRSRSAFSLSNTQAYLKD 196
           S++ G I  +++ +  SN+D+I     AF ++ T+ +L D
Sbjct: 94  SLSRGPIYRSAYPMNHSNVDMIIPEDRAFRVNYTEEFLLD 133


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 62  INIVVIGHVDSGKSTTTGHLIY 127
           + + V+G+VD+GKST  G L +
Sbjct: 230 VRVAVVGNVDAGKSTLLGVLTH 251


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 307 IDAPGHRDFIKNMITGTSQADCAVLIV 387
           +D PGH   +  M+ G +  D A+L++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLI 95


>SB_7400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1499

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 6/76 (7%)
 Frame = -3

Query: 396 TGXYDEH--SAISLRGSCDHVLDEISVSRSINDGNIVLASFEL-PESNIDL---IPRSRS 235
           TG   EH  S+ S      H  + +  SR   D +    S +  PE++  +   +PR  S
Sbjct: 699 TGYLSEHYSSSFSTHFEGTHYSNHVPASRPQKDRSRSFTSGDTDPENSTKVAPRLPRKHS 758

Query: 234 AFSLSNTQAYLKDPLP 187
             S S   A+L  PLP
Sbjct: 759 EHSSSRFGAHLAPPLP 774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,945,283
Number of Sequences: 59808
Number of extensions: 208580
Number of successful extensions: 450
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)