Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0621.Seq
(449 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 143 5e-35
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 143 5e-35
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 143 5e-35
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 143 5e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 134 3e-32
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 82 2e-16
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 76 1e-14
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 47 6e-06
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 47 6e-06
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 47 6e-06
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 47 6e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 47 6e-06
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.042
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.096
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.13
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.13
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 31 0.29
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.39
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.39
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 30 0.68
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 30 0.89
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 29 1.2
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 2.1
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 29 2.1
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 29 2.1
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 27 4.8
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 27 4.8
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 27 6.3
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 143 bits (347), Expect = 5e-35
Identities = 66/69 (95%), Positives = 66/69 (95%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 118 bits (283), Expect = 3e-27
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET+ YY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GTGE AG SKNG
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 143 bits (347), Expect = 5e-35
Identities = 66/69 (95%), Positives = 66/69 (95%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 92.3 bits (219), Expect = 1e-19
Identities = 40/44 (90%), Positives = 43/44 (97%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
IDIALWKFET+ YY+TIIDAPGHRDFIKNMITGTSQADCAVL+V
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVV 116
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 143 bits (347), Expect = 5e-35
Identities = 66/69 (95%), Positives = 66/69 (95%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 118 bits (283), Expect = 3e-27
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET+ YY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GTGE AG SKNG
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 143 bits (347), Expect = 5e-35
Identities = 66/69 (95%), Positives = 66/69 (95%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 118 bits (283), Expect = 3e-27
Identities = 53/64 (82%), Positives = 56/64 (87%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET+ YY+TIIDAPGHRDFIKNMITGTSQADCAVL+V GTGE AG SKNG
Sbjct: 73 IDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 134 bits (324), Expect = 3e-32
Identities = 61/67 (91%), Positives = 62/67 (92%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRT KFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 221 DKLKAER 241
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 81.8 bits (193), Expect = 2e-16
Identities = 36/66 (54%), Positives = 47/66 (71%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKL 229
+K IN++V+GHVD+GKST GHL++ +D RT KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 230 KAERER 247
+ ERER
Sbjct: 227 EEERER 232
Score = 76.6 bits (180), Expect = 8e-15
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V TGE G G
Sbjct: 236 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 295
Query: 436 XREH 447
+EH
Sbjct: 296 TKEH 299
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 81.8 bits (193), Expect = 2e-16
Identities = 36/66 (54%), Positives = 47/66 (71%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKL 229
+K IN++V+GHVD+GKST GHL++ +D RT KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 230 KAERER 247
+ ERER
Sbjct: 245 EEERER 250
Score = 76.6 bits (180), Expect = 8e-15
Identities = 34/64 (53%), Positives = 42/64 (65%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V TGE G G
Sbjct: 254 MDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQ 313
Query: 436 XREH 447
+EH
Sbjct: 314 TKEH 317
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/68 (48%), Positives = 47/68 (69%)
Frame = +2
Query: 44 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLD 223
G K HIN+V +GHVD+GKST G L++ G +DKRT K+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 224 KLKAERER 247
ERE+
Sbjct: 164 TNDEEREK 171
Score = 66.1 bits (154), Expect = 1e-11
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
+++ FET + TI+DAPGH+ F+ NMI G +QAD AVL++ GE G + G
Sbjct: 175 VEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQ 234
Query: 436 XREH 447
REH
Sbjct: 235 TREH 238
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 47.2 bits (107), Expect = 6e-06
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++ G
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDG 144
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTT 112
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
++ET+ + ID PGH D+IKNMITG +Q + A+L+V G
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 148
Score = 33.9 bits (74), Expect = 0.055
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
++ET+ + ID PGH D+IKNMITG +Q + A+L+V G
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 33.9 bits (74), Expect = 0.055
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 47.2 bits (107), Expect = 6e-06
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
++ET+ + ID PGH D+IKNMITG +Q + A+L+V G
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDG 149
Score = 33.9 bits (74), Expect = 0.055
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWV 217
++K H+N+ IGHVD GK+T T ++ G R + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 218 LDKLKAER 241
L+ A+R
Sbjct: 106 LEYETAKR 113
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 47.2 bits (107), Expect = 6e-06
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
I++A +E+ + D PGH DFIKNMI GTSQ D AVL++ G
Sbjct: 96 INVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDG 144
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTT 112
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.042
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.096
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGID 145
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 104 KEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.13
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 136
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 104 KEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 31.5 bits (68), Expect = 0.29
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKG 196
N ++ HVD GKST L+ CG + +K E +G
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERERG 87
Score = 27.5 bits (58), Expect = 4.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
Y + +ID PGH DF + + D +L+V G
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG 138
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.39
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 17 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 127
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.39
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 17 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 127
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 30.3 bits (65), Expect = 0.68
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
VT +D PGH F G AD VL+V G
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDG 240
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 29.9 bits (64), Expect = 0.89
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIV 387
IID PGH F G+S D A+L+V
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV 580
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 283 TSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
T +V+ +D PGH + M+ G + D A L+V
Sbjct: 124 TCVRHVSFVDCPGHDILMATMLNGAAVMDAAFLLV 158
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 62 INIVVIGHVDSGKSTTT 112
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
+ +ID PGH I+ ++ ++ D A++I+ G
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVIIDVVAG 108
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 2.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 62 INIVVIGHVDSGKSTTT 112
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
+ I + Y + IID PGH +F M AD V++V G
Sbjct: 189 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
+ I + Y + IID PGH +F M AD V++V G
Sbjct: 64 VSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 143 DKRTXXKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
+KR EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 143 DKRTXXKFEKEAQEMGKGSFKYAWVLDKLKAERE 244
+KR EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +1
Query: 298 VTIIDAPGHRDFI--KNMITGTSQA 366
V IID+ G RDFI KN+ GT+ A
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGTADA 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,860,983
Number of Sequences: 27780
Number of extensions: 157923
Number of successful extensions: 442
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -