Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0621.Seq
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 127 3e-30
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 127 3e-30
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 127 3e-30
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 127 3e-30
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 78 2e-15
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 65 2e-11
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 50 7e-07
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 46 9e-06
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.12
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.12
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 32 0.21
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 32 0.21
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 32 0.21
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.83
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.83
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.83
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.1
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 29 1.5
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.5
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 29 1.9
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 29 1.9
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 28 3.4
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 28 3.4
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 28 3.4
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 28 3.4
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 28 3.4
At5g02010.1 68418.m00120 expressed protein contains Pfam profile... 27 5.9
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro... 27 7.7
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 27 7.7
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 127 bits (307), Expect = 3e-30
Identities = 60/69 (86%), Positives = 61/69 (88%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 107 bits (258), Expect = 3e-24
Identities = 49/64 (76%), Positives = 53/64 (82%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET+ YY T+IDAPGHRDFIKNMITGTSQADCAVLI+ TG AG SK+G
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (307), Expect = 3e-30
Identities = 60/69 (86%), Positives = 61/69 (88%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 107 bits (258), Expect = 3e-24
Identities = 49/64 (76%), Positives = 53/64 (82%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET+ YY T+IDAPGHRDFIKNMITGTSQADCAVLI+ TG AG SK+G
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (307), Expect = 3e-30
Identities = 60/69 (86%), Positives = 61/69 (88%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 107 bits (258), Expect = 3e-24
Identities = 49/64 (76%), Positives = 53/64 (82%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET+ YY T+IDAPGHRDFIKNMITGTSQADCAVLI+ TG AG SK+G
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 127 bits (307), Expect = 3e-30
Identities = 60/69 (86%), Positives = 61/69 (88%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVL 220
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR +FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 221 DKLKAERER 247
DKLKAERER
Sbjct: 61 DKLKAERER 69
Score = 107 bits (258), Expect = 3e-24
Identities = 49/64 (76%), Positives = 53/64 (82%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
IDIALWKFET+ YY T+IDAPGHRDFIKNMITGTSQADCAVLI+ TG AG SK+G
Sbjct: 73 IDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQ 132
Query: 436 XREH 447
REH
Sbjct: 133 TREH 136
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 78.2 bits (184), Expect = 2e-15
Identities = 33/64 (51%), Positives = 46/64 (71%)
Frame = +2
Query: 56 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKLKA 235
+ +N+ ++GHVDSGKST +G L++ G I ++ K+EKEA+ GKGSF YAW LD+
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAE 297
Query: 236 ERER 247
ERER
Sbjct: 298 ERER 301
Score = 60.5 bits (140), Expect = 5e-10
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Frame = +1
Query: 262 IALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSK-NGXX 438
+A+ F + ++V ++D+PGH+DF+ NMI G +QAD A+L++ G AG G
Sbjct: 307 VAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQT 366
Query: 439 REH 447
REH
Sbjct: 367 REH 369
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 64.9 bits (151), Expect = 2e-11
Identities = 27/64 (42%), Positives = 44/64 (68%)
Frame = +2
Query: 50 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEKEAQEMGKGSFKYAWVLDKL 229
+K H+N+V IGHVD+GKST G +++ G +D R K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 230 KAER 241
+ ER
Sbjct: 158 EEER 161
Score = 63.7 bits (148), Expect = 6e-11
Identities = 27/64 (42%), Positives = 38/64 (59%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTGEXXAGXSKNGX 435
+++ FET TI+DAPGH+ ++ NMI+G SQAD VL++ GE G + G
Sbjct: 167 VEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQ 226
Query: 436 XREH 447
REH
Sbjct: 227 TREH 230
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 50.0 bits (114), Expect = 7e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
I+ A ++ET + +D PGH D++KNMITG +Q D A+L+V G
Sbjct: 130 INTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 178
Score = 38.3 bits (85), Expect = 0.002
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 38 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTXXKFEK 172
K ++K H+NI IGHVD GK+T T L I K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 46.4 bits (105), Expect = 9e-06
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +1
Query: 274 KFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
++ET+ + +D PGH D++KNMITG +Q D +L+V G
Sbjct: 124 EYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDG 166
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTT 112
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.12
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGG 139
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
Score = 31.1 bits (67), Expect = 0.36
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
Y + +ID+PGH DF + T +D A+++V
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLV 105
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.12
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHLIYKCG 136
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.9 bits (69), Expect = 0.21
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 280 ETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
E S Y + +ID PGH DF + S A+L+V G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
Score = 27.9 bits (59), Expect = 3.4
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +2
Query: 29 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 148
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
+ + L + Y I+D PGH +F M AD AVLIV G
Sbjct: 197 MSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 31.9 bits (69), Expect = 0.21
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 256 IDIALWKFETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
+ + L + Y I+D PGH +F M AD AVLIV G
Sbjct: 197 MSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.83
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 304 IIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 277 FETSXYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
+E + + + +ID PGH DF + + + A+L+V G
Sbjct: 147 YEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR 151
N +I H+D GKST L+ G + R
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNR 116
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCG 136
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
Y + +ID+PGH DF + D A+++V
Sbjct: 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 298 VTIIDAPGHRDFIKNMITGTSQADCAVLIVXXGTG 402
+T +D PGH F + G + D VL+V G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 28.7 bits (61), Expect = 1.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 295 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+V+ +D PGH + M+ G + D A+LI+
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLII 150
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 295 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+V+ +D PGH + M+ G + D A+L++
Sbjct: 128 HVSCVDCPGHDILMATMLNGAAIVDGALLLI 158
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 295 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+V+ +D PGH + M+ G + D A+L++
Sbjct: 128 HVSCVDCPGHDILMATMLNGAAIVDGALLLI 158
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
Y V IID PGH DF + D A+L++
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 27.9 bits (59), Expect = 3.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTTGHLIYKCGGI 142
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 292 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
Y V IID PGH DF + D A+L++
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVL 164
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +1
Query: 295 YVTIIDAPGHRDFIKNMITGTSQADCAVLIV 387
+V+ +D PGH + M+ G + D A+L++
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLI 152
>At5g02010.1 68418.m00120 expressed protein contains Pfam profile
PF03759: Domain of unknown function (DUF315)
Length = 546
Score = 27.1 bits (57), Expect = 5.9
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -3
Query: 393 GXYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDLIPR 244
G E+S L+ D + + +IN +I LA E+PES ++ +PR
Sbjct: 237 GGLQENSRKQLQHKRDCTNQILKAAMAIN--SITLADMEIPESYLESLPR 284
>At3g05470.1 68416.m00599 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 884
Score = 26.6 bits (56), Expect = 7.7
Identities = 23/83 (27%), Positives = 35/83 (42%)
Frame = -3
Query: 384 DEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDLIPRSRSAFSLSNTQAY 205
D+ S S+ G + +S + S + V +S E +D+ SRS F +S +
Sbjct: 310 DDESFHSVGGGSQYSNPRLSNASSASGSVNVGSSQRFSEHKLDIPECSRSDFGISVSAPP 369
Query: 204 LKDPLPISWASFSNFXMVRLSIP 136
P P FSN + LS P
Sbjct: 370 PPPPPPPPLPQFSNKRIHTLSSP 392
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 26.6 bits (56), Expect = 7.7
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = -3
Query: 387 YDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDLIPRSRSAFSLSN 217
+D+HS +L+ D + D + ++ N+VL F P+ D + +R A L N
Sbjct: 53 FDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIAR-AIELPN 108
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,471
Number of Sequences: 28952
Number of extensions: 150874
Number of successful extensions: 407
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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