Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0620.Seq
         (487 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    25   0.28 
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    24   0.64 
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   1.5  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   5.9  

>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 244 CPCTHSSSVQTPSTSGILCLEEKQQPEL 161
           C CTH   +   +   I+ ++E QQP L
Sbjct: 566 CMCTHKVDIPLNAIVEIVLVDEVQQPNL 593


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 24.2 bits (50), Expect = 0.64
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 267 SRTRIMHKNLKAKEEGQCSNGSCKI 341
           ++TR++H++L A+    C N + K+
Sbjct: 609 AKTRVVHRDLAARNVLVCENHTVKV 633


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -1

Query: 244 CPCTHSSSVQTPSTSGILCLEEKQQPEL 161
           C CTH   +   +   ++ ++E Q P L
Sbjct: 566 CMCTHQVDIPLNAIVEVVLVDEVQSPNL 593


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 354 FSCWVSCSCHCCIDLLLW 301
           FS WV C     I L+ W
Sbjct: 75  FSAWVRCQDQILIFLVNW 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,049
Number of Sequences: 336
Number of extensions: 1686
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)